Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 3.5e-179 632.1 417 100.0
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 7.6e-166 587.8 414 94.9
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 7.2e-164 581.3 413 89.8
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 7.2e-156 554.7 415 89.9
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.1e-155 553.1 412 91.3
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 9.7e-153 544.3 399 90.2
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 8.2e-152 541.2 399 90.0
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.4e-151 540.4 410 81.7
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 5.3e-151 538.5 404 87.1
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 9.1e-151 537.7 412 87.4
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.5e-150 537.0 399 75.9
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 5.9e-150 535.0 399 88.2
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.0e-149 534.3 399 84.5
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.3e-149 533.9 412 86.4
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.7e-149 533.5 412 85.9
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 2.2e-149 533.1 399 87.7
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 2.2e-149 533.1 399 87.7
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 3.8e-149 532.3 407 85.7
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 5.0e-149 531.9 412 86.4
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 1.1e-148 530.8 400 88.2
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.9e-148 530.0 399 88.7
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.5e-148 529.6 406 87.7
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 9.4e-148 527.7 399 87.0
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 1.2e-147 527.3 403 80.9
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.2e-147 527.3 415 76.1
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 6.1e-147 525.0 412 86.9
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.0e-146 524.2 412 86.4
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.3e-146 523.1 400 77.0
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 3.9e-146 522.3 415 79.3
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 3.9e-146 522.3 415 79.3
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 5.2e-146 521.9 412 79.6
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 6.7e-146 521.5 407 84.5
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 6.7e-146 521.5 395 88.1
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 8.8e-146 521.2 412 85.9
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 1.5e-145 520.4 404 86.9
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.5e-145 520.4 407 80.8
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.2e-144 516.5 405 84.2
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 4.8e-144 515.4 400 86.5
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 8.2e-144 514.6 412 85.2
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.1e-143 514.2 412 85.2
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.1e-143 514.2 412 83.3
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.1e-143 514.2 424 69.8
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.4e-143 513.1 413 81.1
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 2.4e-143 513.1 412 85.0
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 2.4e-143 513.1 412 85.0
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 3.1e-143 512.7 413 75.3
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 3.1e-143 512.7 391 84.4
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 4.1e-143 512.3 400 79.0
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.0e-142 510.0 407 84.5
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 3.5e-142 509.2 418 81.3
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 4.5e-142 508.8 415 82.4
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 7.7e-142 508.1 407 83.5
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 7.7e-142 508.1 412 83.3
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.3e-141 507.3 412 83.0
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 3.8e-141 505.8 416 82.5
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 5.0e-141 505.4 411 81.8
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.9e-140 503.4 412 82.8
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.2e-139 500.7 432 69.9
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.2e-139 500.7 432 69.9
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.8e-138 496.9 399 71.7
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 4.0e-138 495.7 399 77.2
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 1.2e-137 494.2 414 82.9
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 4.8e-136 488.8 406 81.5
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 1.8e-135 486.9 392 84.4
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.8e-135 486.9 414 79.5
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 4.1e-135 485.7 408 72.1
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 7.7e-134 481.5 535 66.0
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.5e-132 476.5 415 71.1
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 4.2e-132 475.7 391 72.6
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 5.5e-132 475.3 410 71.7
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.2e-131 474.2 410 69.8
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 8.0e-131 471.5 520 64.8
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 1.4e-130 470.7 395 68.6
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.8e-130 470.3 409 73.3
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 1.8e-130 470.3 406 70.0
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.2e-129 467.6 418 70.3
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.5e-129 467.2 401 72.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.6e-129 466.5 418 70.1
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.4e-129 466.1 416 70.4
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 4.4e-129 465.7 400 81.2
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.2e-128 463.4 401 67.1
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.8e-127 460.3 392 79.6
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 2.4e-127 459.9 397 77.1
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.6e-126 457.2 412 77.2
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 7.7e-126 454.9 394 77.4
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 5.0e-125 452.2 401 78.3
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 6.5e-125 451.8 394 76.4
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-124 451.1 393 76.3
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-124 451.1 393 76.3
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-124 451.1 393 76.3
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.9e-124 450.3 394 76.1
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.9e-124 450.3 388 78.9
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 4.2e-124 449.1 390 76.9
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 9.5e-124 448.0 396 79.8
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 9.5e-124 448.0 394 76.9
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 9.5e-124 448.0 437 65.7
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.2e-123 447.6 391 77.0
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 1.8e-122 443.7 367 83.4
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.3e-122 443.4 396 79.0
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 2.3e-122 443.4 393 75.6
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 2.3e-122 443.4 393 75.6
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 3.0e-122 443.0 396 78.5
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 5.7e-121 438.7 393 70.0
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.1e-119 434.5 408 69.1
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 5.0e-117 425.6 412 64.8
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.2e-115 421.0 426 62.4
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 6.4e-112 408.7 396 68.7
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 9.2e-111 404.8 389 73.0
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-108 397.9 395 56.7
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.1e-107 393.7 410 57.6
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 6.2e-107 392.1 391 68.3
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 2.6e-105 386.7 400 59.0
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 5.8e-105 385.6 425 56.5
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 7.5e-105 385.2 427 58.3
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-104 384.4 404 58.7
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 5.4e-103 379.0 391 67.8
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-102 377.9 407 54.1
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.6e-102 377.5 382 61.5
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 4.6e-102 375.9 392 57.1
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 1.0e-101 374.8 414 56.8
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-101 374.4 403 57.6
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 1.3e-101 374.4 403 57.6
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 5.0e-101 372.5 391 73.4
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 6.6e-101 372.1 434 54.6
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 3.4e-97 359.8 450 48.0
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.1e-95 354.8 411 63.0
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.1e-95 354.8 409 54.0
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.3e-88 331.3 403 51.6
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.0e-85 321.6 387 50.9
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 2.5e-84 317.0 335 62.1
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 7.3e-84 315.5 266 77.4
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 8.1e-83 312.0 366 56.3
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 4.6e-78 296.2 392 45.9
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 2.1e-75 287.3 419 47.3
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 6.9e-74 282.3 387 43.7
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.1e-70 270.8 294 77.2
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 2.7e-70 270.4 198 66.2
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 2.6e-65 253.8 252 63.5
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 3.8e-64 250.0 194 64.9
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 5.5e-63 246.1 398 41.5
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 5.6e-60 236.1 253 58.1
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 8.2e-59 232.3 253 57.7
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 9.0e-58 228.8 407 45.7
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.1e-52 211.8 100 98.0
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.8e-51 207.2 127 82.7
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 8.5e-48 195.7 131 74.8
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 8.5e-48 195.7 100 88.0
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 2.7e-46 190.7 167 56.9
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-44 185.3 167 56.9
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.5e-44 184.1 88 93.2
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.5e-39 167.5 416 37.0
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 2.0e-33 147.9 101 67.3
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 2.9e-32 144.1 95 72.6
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 5.5e-31 139.8 157 52.2
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 9.4e-31 139.0 95 70.5
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 1.3e-27 128.6 81 74.1
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.3e-27 128.6 183 44.3
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 8.2e-27 125.9 81 74.1
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 4.5e-25 120.2 58 91.4
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.3e-24 118.6 299 36.8
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 1.0e-21 109.0 80 66.2
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.6e-20 104.4 50 84.0
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 1.7e-19 101.7 70 67.1
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 3.1e-18 97.4 63 69.8
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 3.5e-17 94.0 44 93.2
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 2.2e-16 91.3 43 93.0
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 2.9e-16 90.9 69 60.9
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 6.5e-16 89.7 45 84.4
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 4.2e-15 87.0 45 84.4
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.2e-15 87.0 43 86.0
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 1.4e-13 82.0 120 60.0
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.5e-12 78.6 41 87.8
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.5e-12 78.6 41 87.8
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.5e-12 78.6 45 77.8
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 7.5e-12 76.3 38 84.2
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 2.8e-11 74.3 164 29.9
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.8e-10 71.6 56 67.9
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 5.4e-10 70.1 47 59.6
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 2.0e-09 68.2 40 72.5
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 5.5e-07 60.1 83 41.0
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 6.1e-06 56.6 72 37.5


User provided reference genes

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