Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 0.0e+00 2631.3 1289 100.0
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1347.8 1346 53.6
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 0.0e+00 1325.5 852 78.3
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1265.4 1333 52.9
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 1216.8 1321 51.2
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 0.0e+00 1208.7 1314 51.4
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1199.5 1319 51.0
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 0.0e+00 1197.2 1298 50.6
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1187.6 1292 51.0
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 0.0e+00 1184.9 1304 50.3
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 0.0e+00 1179.9 1305 52.0
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1177.5 1326 50.2
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 0.0e+00 1174.5 1359 48.8
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1164.1 1268 51.3
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1157.5 1374 48.8
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 0.0e+00 1140.9 1390 47.4
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1128.2 1319 48.7
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1128.2 1319 48.4
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 0.0e+00 1127.1 1325 48.3
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 0.0e+00 1126.7 1305 49.1
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 0.0e+00 1122.8 1319 48.4
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1114.0 1330 48.0
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 0.0e+00 1114.0 1071 56.0
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 0.0e+00 1104.0 1347 48.3
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1102.4 1146 54.0
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 0.0e+00 1091.3 1329 46.7
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1089.7 1323 47.6
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 0.0e+00 1088.9 1327 47.1
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 0.0e+00 1088.2 1305 47.4
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 0.0e+00 1086.6 1326 47.1
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1083.6 1329 47.8
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 0.0e+00 1082.0 1313 47.1
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 4.3e-309 1065.1 1328 46.2
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 9.6e-309 1063.9 1333 46.0
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 1.6e-308 1063.1 1320 46.0
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 1.1e-307 1060.4 1329 46.2
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 4.0e-307 1058.5 1316 46.7
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 1.7e-305 1053.1 1331 45.9
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.2e-305 1052.7 1326 47.1
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 2.3e-302 1042.7 1334 45.9
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 5.7e-293 1011.5 1350 44.1
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 6.5e-289 998.0 1344 44.5
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 2.0e-285 986.5 1092 50.7
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 2.0e-285 986.5 1326 44.3
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.3e-284 983.8 1326 44.3
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 2.6e-282 976.1 1328 43.9
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 4.7e-279 965.3 1306 43.8
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 8.0e-279 964.5 1345 42.5
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 1.3e-276 957.2 1469 42.1
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 6.3e-276 954.9 1154 47.6
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 2.4e-275 953.0 1310 43.7
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 1.3e-265 920.6 1038 49.6
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 8.5e-265 917.9 1341 41.9
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 7.2e-264 914.8 1308 42.0
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 4.1e-259 899.0 1352 41.8
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 2.0e-258 896.7 1361 41.7
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 3.5e-258 896.0 1311 42.0
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 2.8e-247 859.8 1328 40.7
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 6.4e-244 848.6 1202 42.6
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 4.6e-242 842.4 848 51.4
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 1.1e-232 811.2 1300 39.5
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 1.9e-232 810.4 857 51.8
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 2.3e-230 803.5 476 84.5
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 6.0e-226 788.9 1306 38.6
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 2.3e-225 786.9 1313 38.2
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 9.5e-224 781.6 1301 38.2
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 6.2e-223 778.9 1310 37.9
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 6.8e-222 775.4 1310 37.9
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 2.2e-220 770.4 1306 38.3
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 2.2e-220 770.4 1295 37.8
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 4.9e-220 769.2 1302 37.9
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 3.2e-219 766.5 1327 37.1
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 1.6e-218 764.2 929 47.3
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 1.0e-217 761.5 1303 37.4
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.7e-209 734.2 959 44.3
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 2.5e-200 703.7 921 43.5
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 1.1e-190 671.8 971 42.2
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 2.9e-188 663.7 1527 32.4
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 5.1e-185 652.9 1290 34.6
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 5.5e-163 579.7 1136 36.7
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.1e-160 572.0 602 51.0
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 1.9e-139 501.5 395 63.5
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 8.9e-137 492.7 1347 29.7
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 9.8e-136 489.2 893 36.7
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 8.6e-132 476.1 1118 31.4
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 4.7e-130 470.3 531 46.0
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 6.8e-129 466.5 779 36.5
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 2.9e-127 461.1 384 59.6
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 2.5e-123 448.0 373 61.1
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 3.3e-123 447.6 374 60.4
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 5.4e-118 430.3 368 60.1
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 5.2e-105 387.1 944 32.0
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.5e-104 385.6 404 49.3
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 8.4e-103 379.8 318 57.9
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 2.5e-99 368.2 375 57.6
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 1.6e-90 339.0 362 48.3
vmacro13662 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 6.2e-82 310.5 228 73.2
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 3.0e-76 291.6 286 53.5
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 8.2e-74 283.5 432 39.1
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 6.9e-65 253.8 231 60.6
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 2.9e-63 248.4 475 37.1
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 1.1e-62 246.5 256 50.4
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.5e-62 245.4 191 63.9
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 7.2e-62 243.8 348 41.1
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 7.2e-62 243.8 348 41.1
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 9.4e-62 243.4 998 25.1
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 1.8e-60 239.2 226 58.8
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 5.0e-55 221.1 467 32.3
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 3.9e-52 211.5 247 43.3
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 6.7e-52 210.7 213 54.0
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 5.3e-41 174.5 575 25.6
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 2.1e-37 162.5 206 44.7
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 1.8e-36 159.5 209 47.4
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 5.4e-33 147.9 176 47.7
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 2.1e-29 136.0 216 38.4
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 2.6e-27 129.0 350 25.7
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.3e-26 126.7 216 38.9
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.4e-25 123.2 122 51.6
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 7.7e-24 117.5 184 40.8
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 5.0e-23 114.8 82 68.3
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 4.0e-20 105.1 82 64.6
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.4e-19 102.1 82 63.4
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 7.0e-17 94.4 82 59.8
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.6e-16 93.2 327 28.1
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 2.7e-16 92.4 77 54.5
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 1.3e-15 90.1 345 25.5
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 1.7e-15 89.7 394 26.6
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.1e-13 82.8 181 32.6
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 2.8e-13 82.4 114 37.7
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 6.2e-13 81.3 80 48.8
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 8.0e-13 80.9 105 42.9
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 1.8e-12 79.7 48 72.9
Rhsim02G0130700 Rhododendron simsii HOM05D007456 ORTHO05D009411 2.3e-12 79.3 49 75.5
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 4.9e-10 71.6 85 49.4
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.1e-09 70.5 69 49.3
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.4e-09 69.3 96 40.6
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 9.2e-09 67.4 102 40.2
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 6.0e-08 64.7 102 39.2
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 1.0e-07 63.9 82 50.0
BcaC01g02118 Brassica carinata HOM05D014762 ORTHO05D023916 1.3e-07 63.5 46 69.6
BolC3t19073H Brassica oleracea HOM05D005395 ORTHO05D024133 1.3e-07 63.5 75 52.0
BcaC06g35590 Brassica carinata HOM05D033522 ORTHO05D024133 3.9e-07 62.0 85 47.1


User provided reference genes

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