Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 5.4e-123 444.5 250 100.0
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 8.6e-105 384.0 242 85.5
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 1.7e-92 343.2 251 78.9
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 2.1e-90 336.3 250 78.4
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 1.1e-88 330.5 250 72.8
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 3.3e-88 328.9 248 68.5
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 4.3e-88 328.6 249 75.5
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 9.6e-88 327.4 248 74.2
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 8.1e-87 324.3 247 70.9
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 1.4e-86 323.6 255 73.3
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 8.9e-86 320.9 253 72.3
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.2e-85 320.5 256 70.7
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 2.6e-85 319.3 181 82.3
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 5.8e-85 318.2 186 81.7
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 5.8e-85 318.2 246 76.8
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 7.6e-85 317.8 251 64.1
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 9.9e-85 317.4 183 81.4
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 1.3e-84 317.0 209 75.1
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 1.7e-84 316.6 250 69.2
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 2.2e-84 316.2 245 67.8
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 3.8e-84 315.5 247 74.5
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 4.9e-84 315.1 246 67.5
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 6.4e-84 314.7 252 67.5
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 1.1e-83 313.9 252 64.7
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 4.2e-83 312.0 248 74.6
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 4.2e-83 312.0 256 64.8
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 5.4e-83 311.6 252 73.0
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 7.1e-83 311.2 247 74.1
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 1.2e-82 310.5 183 81.4
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 1.2e-82 310.5 178 84.3
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 1.6e-82 310.1 250 74.4
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 1.6e-82 310.1 249 67.9
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 1.6e-82 310.1 248 69.8
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 1.6e-82 310.1 218 76.6
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 2.7e-82 309.3 248 69.0
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 3.5e-82 308.9 247 68.8
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 4.6e-82 308.5 251 66.1
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 1.0e-81 307.4 247 72.1
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 1.3e-81 307.0 251 62.9
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 1.7e-81 306.6 247 71.3
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 2.3e-81 306.2 170 82.9
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 2.3e-81 306.2 250 65.2
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 5.1e-81 305.1 251 69.7
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 5.1e-81 305.1 247 67.6
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 6.6e-81 304.7 249 65.5
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 2.5e-80 302.8 252 67.5
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 2.5e-80 302.8 182 79.1
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 3.3e-80 302.4 252 61.9
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 7.3e-80 301.2 180 80.6
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 9.6e-80 300.8 249 66.7
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 2.1e-79 299.7 179 81.0
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 2.1e-79 299.7 246 66.3
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 2.8e-79 299.3 235 67.2
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 3.6e-79 298.9 172 80.8
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 4.8e-79 298.5 183 76.5
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 4.8e-79 298.5 181 80.1
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 4.8e-79 298.5 252 66.7
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 4.8e-79 298.5 183 78.7
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 6.2e-79 298.1 235 70.2
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 6.2e-79 298.1 169 83.4
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 6.2e-79 298.1 252 67.1
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 1.1e-78 297.4 249 65.9
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 1.8e-78 296.6 173 79.2
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 2.4e-78 296.2 250 67.6
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 2.4e-78 296.2 227 70.0
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 2.4e-78 296.2 247 67.6
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 1.5e-77 293.5 184 77.2
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 2.0e-77 293.1 178 78.7
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 2.0e-77 293.1 183 76.0
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 4.5e-77 292.0 249 71.9
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 7.6e-77 291.2 179 78.2
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 7.6e-77 291.2 179 78.2
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 1.3e-76 290.4 255 68.6
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 1.3e-76 290.4 255 68.6
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 1.7e-76 290.0 248 67.3
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 2.2e-76 289.7 184 76.6
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 2.2e-76 289.7 184 76.6
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 2.2e-76 289.7 252 68.3
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 2.2e-76 289.7 253 62.8
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 3.8e-76 288.9 176 79.0
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 3.8e-76 288.9 169 80.5
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 1.1e-75 287.3 247 63.2
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 2.4e-75 286.2 246 69.1
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 2.1e-74 283.1 247 66.4
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 2.7e-74 282.7 241 68.5
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 1.5e-72 276.9 176 73.9
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 9.6e-72 274.2 184 71.7
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 9.6e-72 274.2 251 62.5
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 5.3e-70 268.5 183 71.6
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 4.5e-69 265.4 183 71.6
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 5.8e-69 265.0 179 69.8
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 1.4e-67 260.4 247 58.7
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 1.9e-67 260.0 179 71.5
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 1.9e-67 260.0 179 71.5
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 5.5e-67 258.5 163 78.5
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 1.2e-66 257.3 152 79.6
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 1.3e-65 253.8 181 69.6
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 1.1e-64 250.8 170 71.2
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 1.9e-64 250.0 178 65.2
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 1.9e-64 250.0 178 65.2
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 6.2e-63 245.0 202 77.2
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 2.4e-62 243.0 179 64.2
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 1.2e-61 240.7 210 65.2
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 2.0e-61 240.0 169 68.0
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 4.9e-60 235.3 140 79.3
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 4.9e-60 235.3 182 62.6
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 1.6e-58 230.3 132 84.1
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 6.9e-54 214.9 170 58.2
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 2.9e-44 183.0 120 71.7
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 3.8e-44 182.6 126 69.0
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 7.2e-43 178.3 124 71.0
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 4.4e-40 169.1 105 81.9
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 2.9e-28 129.8 170 42.4
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 3.0e-25 119.8 75 77.3
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 1.8e-22 110.5 187 33.2
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 8.8e-17 91.7 188 35.6
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 2.0e-08 63.9 50 60.0
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 4.4e-08 62.8 151 27.8
AagrBONN_evm.TU.Sc2ySwM_368.1623 Anthoceros agrestis HOM05D006773 ORTHO05D008775 3.7e-07 59.7 153 27.5
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 4.9e-07 59.3 151 26.5
MCO12G188 Micromonas commoda HOM05D006848 ORTHO05D008445 4.9e-07 59.3 180 27.8
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 6.3e-07 58.9 151 27.2
Ah.16g108660 Amaranthus hybridus HOM05D006773 ORTHO05D008775 1.1e-06 58.2 152 26.3
Solyc04g064670.3 Solanum lycopersicum HOM05D006773 ORTHO05D008775 1.4e-06 57.8 147 26.5
Sopen04g026630 Solanum pennellii HOM05D006773 ORTHO05D008775 1.4e-06 57.8 147 26.5
PGSC0003DMG401024815 Solanum tuberosum HOM05D006773 ORTHO05D008775 1.4e-06 57.8 147 26.5
Nitab4.5_0000445g0090 Nicotiana tabacum HOM05D006773 ORTHO05D008775 1.8e-06 57.4 147 25.9
Peaxi162Scf00263g00028 Petunia axillaris HOM05D006773 ORTHO05D008775 1.8e-06 57.4 147 26.5
Lsat_1_v5_gn_6_96860 Lactuca sativa HOM05D006773 ORTHO05D008775 3.1e-06 56.6 151 26.5
MBI06_g41413_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 3.1e-06 56.6 150 28.0
CiPaw.15G022300 Carya illinoinensis HOM05D006773 ORTHO05D008775 4.1e-06 56.2 147 27.9
SMO270G0074 Selaginella moellendorffii HOM05D006773 ORTHO05D008775 4.1e-06 56.2 150 27.3
MBI06_g35966_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 5.4e-06 55.8 189 25.9
CAN.G2.47 Capsicum annuum HOM05D006773 ORTHO05D008775 7.0e-06 55.5 147 26.5
Oeu025718.1 Olea europaea HOM05D006773 ORTHO05D008775 7.0e-06 55.5 152 26.3
Nn5g28592 Nelumbo nucifera HOM05D006773 ORTHO05D008775 9.2e-06 55.1 150 27.3


User provided reference genes

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