Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 2.3e-218 761.9 386 100.0
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.8e-176 621.7 456 74.8
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.9e-151 539.7 360 77.2
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 5.9e-145 518.1 361 74.8
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.0e-144 517.3 361 74.5
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 2.5e-143 512.7 360 73.9
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.0e-141 507.3 355 73.2
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.0e-141 507.3 365 72.6
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 8.8e-141 504.2 358 73.2
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.2e-140 503.8 359 70.8
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 1.5e-140 503.4 324 80.2
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 3.3e-140 502.3 354 74.0
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 9.7e-140 500.7 353 72.8
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 3.7e-139 498.8 362 71.0
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 4.8e-139 498.4 360 72.8
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 8.2e-139 497.7 358 72.6
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.4e-138 496.1 358 72.6
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 4.1e-138 495.4 357 73.1
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 5.3e-138 495.0 361 72.0
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 7.0e-138 494.6 362 70.2
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 2.0e-137 493.0 353 71.1
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.5e-137 492.3 360 72.8
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 5.9e-137 491.5 360 69.7
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 5.9e-137 491.5 359 73.0
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 5.9e-137 491.5 362 70.2
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.0e-136 490.7 353 70.8
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.7e-136 490.0 360 72.5
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.7e-136 490.0 357 67.8
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 2.2e-136 489.6 359 71.9
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 2.2e-136 489.6 361 70.6
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 3.8e-136 488.8 355 72.1
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 3.8e-136 488.8 353 70.0
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 5.0e-136 488.4 358 72.1
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 6.5e-136 488.0 353 70.3
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.5e-135 486.9 360 70.0
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 4.2e-135 485.3 362 70.2
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 7.2e-135 484.6 360 71.1
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 9.4e-135 484.2 361 68.7
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 2.1e-134 483.0 354 70.3
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 3.6e-134 482.3 360 70.0
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 8.8e-133 477.6 343 70.6
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 1.2e-132 477.2 362 69.3
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.0e-132 476.5 343 67.9
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 9.8e-132 474.2 358 66.5
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.7e-131 472.2 354 71.2
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 3.7e-131 472.2 360 69.2
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 4.8e-131 471.9 358 66.5
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.1e-130 470.7 359 70.8
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.4e-130 470.3 353 68.8
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.1e-130 469.2 369 65.6
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 5.4e-130 468.4 324 74.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 5.4e-130 468.4 362 69.1
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 3.5e-129 465.7 363 68.6
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 4.5e-129 465.3 364 68.1
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 4.5e-129 465.3 385 64.2
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 5.9e-129 464.9 356 69.4
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.5e-128 461.5 353 67.7
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 8.6e-128 461.1 353 64.6
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 3.2e-127 459.1 325 73.5
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.1e-126 456.4 325 72.6
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 3.6e-126 455.7 353 67.7
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.7e-126 455.3 352 67.3
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.8e-125 453.4 325 72.3
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.3e-125 453.0 351 63.5
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 8.9e-125 451.1 349 67.6
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.2e-124 450.7 353 67.7
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 2.0e-124 449.9 351 66.4
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.6e-124 449.5 353 67.1
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.8e-122 443.4 352 67.9
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 1.2e-121 440.7 361 66.2
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.6e-121 440.3 429 57.6
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 2.7e-121 439.5 355 67.3
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 7.8e-121 438.0 324 65.7
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.0e-120 437.6 351 66.7
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.3e-120 437.2 354 65.0
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 5.0e-120 435.3 351 59.8
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 8.6e-120 434.5 355 65.4
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.1e-119 434.1 361 64.5
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.1e-119 434.1 366 65.0
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.5e-119 433.7 382 59.4
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.5e-119 433.7 324 69.4
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.9e-119 433.3 338 68.3
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 7.3e-119 431.4 344 66.9
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.8e-118 429.5 391 57.3
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 6.1e-118 428.3 328 69.2
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 8.0e-118 427.9 357 63.6
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.0e-117 427.6 336 68.5
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 6.8e-117 424.9 325 69.2
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 2.0e-116 423.3 320 69.1
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 7.5e-116 421.4 357 62.5
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.1e-114 417.5 351 61.5
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.7e-113 412.9 351 61.5
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 4.6e-113 412.1 354 61.9
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.2e-110 404.1 323 67.2
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.6e-110 403.7 356 61.8
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 3.1e-109 399.4 351 59.5
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 1.2e-108 397.5 351 60.4
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.2e-108 397.5 320 66.6
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 1.5e-108 397.1 355 58.0
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 2.6e-108 396.4 316 69.0
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 4.4e-108 395.6 351 59.0
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 5.8e-108 395.2 360 61.4
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 2.2e-107 393.3 317 64.7
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 2.2e-107 393.3 319 65.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 2.2e-107 393.3 315 67.9
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.9e-107 392.1 359 60.7
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.4e-106 390.6 275 66.9
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 2.7e-105 386.3 352 58.8
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 6.0e-105 385.2 357 58.8
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 6.0e-105 385.2 325 62.8
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 2.3e-104 383.3 347 59.1
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 6.6e-104 381.7 340 59.4
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 4.3e-103 379.0 345 59.4
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 9.5e-103 377.9 276 67.0
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 2.8e-102 376.3 345 59.1
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.7e-102 375.6 357 61.9
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 4.7e-102 375.6 296 68.6
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.0e-100 370.2 294 68.7
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 8.3e-99 364.8 347 50.7
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.4e-98 363.2 348 60.6
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 4.1e-98 362.5 315 65.4
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 7.1e-98 361.7 272 67.6
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 9.2e-98 361.3 288 68.1
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 1.0e-96 357.8 414 48.8
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 8.6e-96 354.8 277 63.5
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.6e-94 350.5 251 66.9
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 8.1e-94 348.2 341 57.5
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.8e-92 342.0 336 53.9
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.2e-91 340.1 289 64.7
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.2e-89 334.3 351 54.4
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.6e-89 334.0 351 52.1
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.0e-88 331.3 335 57.9
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 4.3e-87 325.9 320 50.9
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 7.3e-87 325.1 262 58.0
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 9.0e-85 318.2 240 62.1
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 2.6e-84 316.6 351 50.4
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 9.9e-84 314.7 322 48.8
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.9e-83 313.2 320 55.6
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 5.4e-82 308.9 323 50.2
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.9e-79 300.4 323 55.1
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 9.6e-79 298.1 322 55.0
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.6e-78 297.4 320 53.8
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 3.6e-78 296.2 320 55.3
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 6.2e-78 295.4 327 53.5
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.8e-77 293.9 327 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 5.3e-77 292.4 319 51.1
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 4.5e-76 289.3 326 51.8
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 4.5e-76 289.3 320 54.1
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 9.9e-76 288.1 323 54.2
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 9.9e-76 288.1 186 68.8
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 6.4e-75 285.4 323 52.3
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 4.2e-74 282.7 327 49.2
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.2e-73 281.2 320 53.1
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 3.9e-72 276.2 322 52.5
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.5e-66 255.8 200 61.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 2.2e-59 233.8 222 47.7
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 3.0e-56 223.4 327 45.6
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 8.7e-56 221.9 332 46.1
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-52 211.1 178 57.9
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 2.6e-52 210.3 309 46.6
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 3.4e-52 209.9 367 39.2
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 1.3e-51 208.0 109 86.2
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 2.3e-48 197.2 110 82.7
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.5e-39 167.9 92 80.4
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 5.7e-15 86.3 102 38.2
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 3.5e-12 77.0 42 88.1
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 3.5e-12 77.0 71 63.4
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 4.5e-12 76.6 37 89.2
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 5.9e-12 76.3 47 72.3
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 1.5e-10 71.6 42 78.6
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 2.5e-10 70.9 40 80.0
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 2.5e-10 70.9 40 80.0
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 9.5e-10 68.9 44 72.7
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 3.0e-08 63.9 44 72.7
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 8.9e-08 62.4 31 90.3
C08p21400 Brassica napus HOM05D003920 ORTHO05D017698 3.4e-07 60.5 49 63.3
FAN10G2408 Fragaria x ananassa HOM05D003920 ORTHO05D017698 7.5e-07 59.3 48 64.6
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 1.7e-06 58.2 31 87.1


User provided reference genes

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