Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 7.6e-217 756.9 387 100.0
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 1.5e-169 599.7 395 82.3
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.0e-160 570.5 397 78.6
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.4e-159 566.6 397 78.1
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 1.8e-149 533.1 398 74.1
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 6.3e-147 524.6 396 73.5
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 5.3e-146 521.5 397 72.3
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.7e-145 519.2 404 72.3
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 4.5e-145 518.5 404 73.0
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 7.7e-145 517.7 396 71.5
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 1.0e-144 517.3 396 71.5
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.7e-144 516.5 402 73.1
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 2.2e-144 516.2 352 79.3
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 2.9e-144 515.8 400 73.2
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 6.5e-144 514.6 399 71.7
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 6.5e-144 514.6 394 72.3
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.9e-143 513.1 369 75.9
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.9e-143 513.1 396 71.2
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 3.2e-143 512.3 397 71.3
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 4.2e-143 511.9 400 69.2
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 7.2e-143 511.1 412 70.6
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 9.4e-143 510.8 409 69.4
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 2.7e-142 509.2 398 71.4
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 3.6e-142 508.8 399 72.7
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 2.3e-141 506.1 405 69.6
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 3.0e-141 505.8 378 74.3
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 4.0e-141 505.4 393 72.8
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 5.2e-141 505.0 398 70.1
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 6.8e-141 504.6 381 73.8
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 8.8e-141 504.2 403 71.5
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 8.8e-141 504.2 402 71.1
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 2.8e-139 499.2 404 70.5
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 3.7e-139 498.8 389 72.2
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 6.3e-139 498.0 399 69.2
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 1.1e-138 497.3 385 71.9
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 1.8e-138 496.5 402 70.4
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 1.8e-138 496.5 393 71.0
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.8e-138 496.5 389 70.7
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.8e-138 496.5 373 72.9
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 2.4e-138 496.1 403 69.2
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 2.4e-138 496.1 400 70.0
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 4.1e-138 495.4 390 70.3
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 5.4e-138 495.0 396 69.9
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 1.2e-137 493.8 403 69.5
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.6e-137 493.4 377 71.9
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 1.6e-137 493.4 401 69.1
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 2.0e-137 493.0 397 69.5
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 2.0e-137 493.0 397 69.5
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 2.7e-137 492.7 390 71.0
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 2.7e-137 492.7 396 69.7
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 3.5e-137 492.3 370 72.7
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 5.9e-137 491.5 399 69.2
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 5.9e-137 491.5 399 69.2
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 1.7e-136 490.0 400 68.8
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 1.7e-136 490.0 400 68.8
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 2.3e-136 489.6 413 67.6
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 2.9e-136 489.2 391 69.6
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 3.8e-136 488.8 396 69.2
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 3.8e-136 488.8 390 70.0
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 8.6e-136 487.6 408 69.1
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 1.5e-135 486.9 398 68.8
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 9.5e-135 484.2 397 68.8
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 9.5e-135 484.2 393 70.7
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 6.1e-134 481.5 409 67.7
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 6.1e-134 481.5 402 67.7
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 1.0e-133 480.7 397 68.0
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.4e-133 480.3 393 69.2
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 2.3e-133 479.6 406 67.7
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 3.0e-133 479.2 376 70.2
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.2e-133 478.4 421 66.5
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 8.9e-133 477.6 359 72.4
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 4.4e-132 475.3 358 72.3
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 1.7e-131 473.4 423 65.0
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 3.7e-131 472.2 358 73.2
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 3.7e-131 472.2 346 75.7
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 3.1e-130 469.2 394 66.5
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 9.2e-130 467.6 392 65.8
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.0e-129 466.5 331 77.9
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 3.5e-129 465.7 403 65.8
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 5.9e-129 464.9 395 68.9
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 1.7e-128 463.4 398 66.8
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 5.0e-128 461.8 390 66.2
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 8.6e-128 461.1 392 66.3
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 1.1e-127 460.7 386 67.1
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 2.5e-127 459.5 404 64.9
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 5.6e-127 458.4 409 63.6
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 1.2e-126 457.2 422 62.6
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.2e-126 457.2 406 63.5
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 2.1e-126 456.4 326 76.7
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 2.8e-126 456.1 305 79.3
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 8.0e-126 454.5 371 68.5
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 8.0e-126 454.5 392 64.8
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 3.0e-125 452.6 373 67.6
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 6.8e-125 451.4 315 78.1
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 4.4e-124 448.7 354 68.9
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 5.8e-124 448.4 366 66.4
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 4.9e-123 445.3 356 67.7
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 1.4e-122 443.7 320 75.6
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 7.0e-122 441.4 421 63.7
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 1.6e-121 440.3 307 77.2
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 9.8e-116 421.0 362 65.5
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 1.2e-110 404.1 317 68.1
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 6.2e-110 401.7 317 68.1
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 4.0e-109 399.1 363 64.5
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 8.3e-107 391.3 316 65.2
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 3.2e-106 389.4 233 85.4
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 2.7e-105 386.3 352 60.5
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 3.2e-98 362.8 311 61.7
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 3.1e-93 346.3 294 64.3
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 3.1e-93 346.3 256 73.0
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 1.0e-88 331.3 232 74.6
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 9.3e-82 308.1 291 57.7
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 9.6e-79 298.1 269 63.2
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.1e-77 294.7 279 54.1
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 8.4e-75 285.0 294 50.7
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 2.1e-73 280.4 302 54.3
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 5.6e-71 272.3 239 64.9
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 9.0e-69 265.0 204 72.1
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 4.9e-67 259.2 174 74.7
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 1.9e-58 230.7 182 70.9
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 5.9e-52 209.1 189 63.0
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 7.2e-50 202.2 203 56.2
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 2.7e-49 200.3 109 90.8
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 3.9e-48 196.4 188 64.9
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 5.1e-48 196.1 116 85.3
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 1.3e-46 191.4 134 76.9
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 2.2e-46 190.7 180 63.3
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 2.2e-46 190.7 181 62.4
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 3.2e-34 150.2 140 58.6
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 2.6e-31 140.6 237 38.0
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 1.3e-27 128.3 264 33.3
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.6e-25 121.3 162 48.1
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 2.3e-24 117.5 196 37.8
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 1.3e-22 111.7 76 81.6
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.3e-22 111.7 214 40.7
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 3.8e-19 100.1 50 98.0
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 5.0e-19 99.8 268 30.6
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 8.0e-17 92.4 98 55.1
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 1.1e-13 82.0 82 56.1
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 3.2e-13 80.5 114 51.8


User provided reference genes

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