Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.0e-93 346.7 164 100.0
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.0e-58 230.3 164 68.3
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 1.4e-50 203.4 165 57.6
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 1.1e-47 193.7 184 52.2
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.4e-42 176.8 134 62.7
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.0e-42 175.6 139 59.0
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.0e-42 175.6 139 59.0
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 9.8e-41 170.6 149 58.4
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 2.9e-40 169.1 153 49.0
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 2.0e-38 162.9 125 57.6
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 1.3e-37 160.2 144 50.7
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 1.3e-37 160.2 141 51.1
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.5e-36 156.8 141 50.4
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.6e-35 153.3 153 50.3
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 2.1e-35 152.9 136 53.7
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 4.7e-35 151.8 149 49.7
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.4e-34 150.2 148 45.9
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 1.4e-34 150.2 151 48.3
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 1.4e-34 150.2 144 45.1
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.4e-34 150.2 144 45.1
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.3e-34 149.4 144 44.4
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.3e-34 149.4 144 45.1
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 3.1e-34 149.1 146 47.9
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 5.2e-34 148.3 151 47.0
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 5.2e-34 148.3 151 47.0
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 7.5e-33 144.4 128 48.4
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 9.8e-33 144.1 131 47.3
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 4.9e-32 141.7 148 47.3
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.1e-31 140.6 136 53.7
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.4e-31 140.2 151 45.0
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.9e-31 139.8 144 43.8
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 2.4e-31 139.4 133 46.6
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.1e-31 138.7 144 45.1
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 1.2e-30 137.1 141 48.2
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.1e-30 136.3 132 50.0
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 2.1e-30 136.3 162 43.8
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 2.7e-30 136.0 145 49.0
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 2.7e-30 136.0 145 46.9
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.5e-30 135.6 150 43.3
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 6.0e-30 134.8 143 48.3
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 7.8e-30 134.4 146 43.8
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 1.0e-29 134.0 128 48.4
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.3e-29 132.9 138 44.9
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 2.3e-29 132.9 144 45.8
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.0e-29 132.5 148 46.6
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 3.9e-29 132.1 134 45.5
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 3.9e-29 132.1 138 44.9
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 3.9e-29 132.1 134 44.8
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 3.9e-29 132.1 125 44.0
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 5.0e-29 131.7 156 42.3
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 6.6e-29 131.3 149 44.3
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 6.6e-29 131.3 144 45.1
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 8.6e-29 131.0 151 45.7
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 1.1e-28 130.6 142 47.2
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 1.1e-28 130.6 129 46.5
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.1e-28 130.6 140 47.9
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 1.1e-28 130.6 140 47.9
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.9e-28 129.8 135 48.1
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.9e-28 129.8 141 46.1
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 1.9e-28 129.8 129 49.6
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 3.3e-28 129.0 152 44.7
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.3e-28 128.6 152 46.7
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 4.3e-28 128.6 129 45.0
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 7.3e-28 127.9 130 49.2
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 2.8e-27 125.9 125 44.0
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.8e-27 125.9 140 47.1
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.8e-27 125.9 140 47.1
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 4.7e-27 125.2 159 38.4
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 4.7e-27 125.2 153 39.2
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 4.7e-27 125.2 123 49.6
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.8e-26 123.2 133 45.9
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 1.8e-26 123.2 153 44.4
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 1.8e-26 123.2 142 42.3
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 2.3e-26 122.9 128 40.6
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 4.0e-26 122.1 158 39.9
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 4.0e-26 122.1 107 54.2
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 8.9e-26 120.9 132 46.2
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 1.2e-25 120.6 152 41.4
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 1.2e-25 120.6 130 50.0
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 5.8e-25 118.2 147 39.5
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 5.8e-25 118.2 125 47.2
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 7.5e-25 117.9 128 46.9
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 9.9e-25 117.5 141 39.7
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 1.3e-24 117.1 153 39.9
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 1.3e-24 117.1 151 41.7
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 2.9e-24 115.9 144 43.8
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 2.9e-24 115.9 151 42.4
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 4.9e-24 115.2 128 43.8
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 1.4e-23 113.6 127 48.8
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 3.2e-23 112.5 138 47.1
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 4.1e-23 112.1 150 39.3
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 1.2e-22 110.5 145 40.7
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 2.1e-22 109.8 125 44.8
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 3.5e-22 109.0 160 38.8
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 3.5e-22 109.0 122 45.9
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 6.0e-22 108.2 143 43.4
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 1.3e-21 107.1 103 44.7
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 2.3e-21 106.3 151 41.7
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 5.1e-21 105.1 150 41.3
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 5.1e-21 105.1 106 47.2
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 6.6e-21 104.8 118 44.1
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 8.6e-21 104.4 116 46.6
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 1.9e-20 103.2 130 43.1
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 7.3e-20 101.3 129 38.0
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 9.5e-20 100.9 98 48.0
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 1.6e-19 100.1 108 42.6
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 2.8e-19 99.4 123 37.4
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 6.2e-19 98.2 124 38.7
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.1e-18 97.4 100 42.0
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.4e-18 97.1 93 48.4
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.2e-17 94.0 168 36.9
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.5e-17 93.6 168 36.9
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.6e-17 92.8 92 50.0
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 3.4e-17 92.4 130 41.5
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.4e-17 92.0 102 43.1
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 7.6e-17 91.3 166 40.4
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 9.9e-17 90.9 154 35.7
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.7e-16 90.1 114 45.6
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.7e-16 90.1 114 45.6
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.2e-16 89.7 149 36.2
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 2.2e-16 89.7 98 49.0
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 2.9e-16 89.4 128 40.6
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 3.8e-16 89.0 128 40.6
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 6.4e-16 88.2 92 44.6
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 6.4e-16 88.2 130 38.5
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 8.4e-16 87.8 85 49.4
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.4e-15 85.1 149 36.2
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 9.2e-15 84.3 103 40.8
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 4.6e-14 82.0 94 45.7
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 4.6e-14 82.0 85 40.0
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 1.0e-13 80.9 126 34.9
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.7e-13 80.1 116 39.7
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 1.2e-11 73.9 99 38.4
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.1e-10 70.9 137 30.7
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 3.1e-10 69.3 105 36.2
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 2.6e-09 66.2 120 35.8
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 7.6e-09 64.7 68 44.1
Sed0001772 Sechium edule HOM05D000395 ORTHO05D000088 1.7e-08 63.5 152 30.3
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.9e-08 62.0 74 41.9
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 4.9e-08 62.0 98 33.7
Nitab4.5_0002937g0010 Nicotiana tabacum HOM05D010896 ORTHO05D011162 8.4e-08 61.2 105 37.1
Cpa.g.sc132.62 Carica papaya HOM05D000395 ORTHO05D000088 1.4e-07 60.5 147 31.3
Lj2A601G13 Lonicera japonica HOM05D000395 ORTHO05D000088 1.9e-07 60.1 100 34.0
SEGI_02922 Sequoiadendron giganteum HOM05D000823 ORTHO05D005846 1.9e-07 60.1 96 35.4
TWI09G1611 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.4e-07 59.7 106 35.8
CANSAT01G2954 Cannabis sativa HOM05D000395 ORTHO05D000088 4.2e-07 58.9 104 31.7
QL05p084622 Quercus lobata HOM05D000395 ORTHO05D000088 4.2e-07 58.9 98 34.7
QL05p084669 Quercus lobata HOM05D000395 ORTHO05D000088 4.2e-07 58.9 98 34.7
PSO170G5993 Papaver somniferum HOM05D000823 ORTHO05D000088 5.4e-07 58.5 150 30.0
FAN26G1384 Fragaria x ananassa HOM05D000395 ORTHO05D000088 9.3e-07 57.8 91 34.1
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 9.3e-07 57.8 131 32.1
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 9.3e-07 57.8 60 46.7
CiPaw.14G049000 Carya illinoinensis HOM05D000838 ORTHO05D000656 1.6e-06 57.0 121 32.2
PGR042G1584 Punica granatum HOM05D000395 ORTHO05D000088 1.6e-06 57.0 113 32.7
QL11p039132 Quercus lobata HOM05D000823 ORTHO05D000088 1.6e-06 57.0 81 35.8
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 2.1e-06 56.6 95 36.8
QL05p085016 Quercus lobata HOM05D000395 ORTHO05D000088 2.1e-06 56.6 98 34.7
MD02G1160300 Malus domestica HOM05D000395 ORTHO05D000088 2.7e-06 56.2 87 35.6
PSO017G0811 Papaver somniferum HOM05D000823 ORTHO05D000088 2.7e-06 56.2 150 29.3
TWI09G0341 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.7e-06 56.2 129 31.8
SGA_v2.0_scaffold15G07218 Striga asiatica HOM05D000395 ORTHO05D000088 4.6e-06 55.5 86 33.7
Ah.11g043200 Amaranthus hybridus HOM05D000823 ORTHO05D000088 6.0e-06 55.1 117 31.6
COL.COLO4_30629 Corchorus olitorius HOM05D000395 ORTHO05D000088 6.0e-06 55.1 148 28.4
Nitab4.5_0007949g0010 Nicotiana tabacum HOM05D010896 ORTHO05D011162 6.0e-06 55.1 94 37.2
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 6.0e-06 55.1 97 30.9
SGA_v2.0_scaffold15G07220 Striga asiatica HOM05D000806 ORTHO05D002324 6.0e-06 55.1 86 33.7
TWI09G0236 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 6.0e-06 55.1 125 29.6
CiPaw.02G012600 Carya illinoinensis HOM05D000395 ORTHO05D000088 7.8e-06 54.7 88 34.1
Ciclev10033261m.g Citrus clementina HOM05D000462 ORTHO05D005846 7.8e-06 54.7 52 50.0


User provided reference genes

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