Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0046900 Rhododendron simsii HOM05D010623 ORTHO05D012718 1.8e-254 882.1 458 100.0
vmacro13591 Vaccinium macrocarpon HOM05D010623 ORTHO05D012718 1.6e-152 543.5 451 69.2
Oeu060696.1 Olea europaea HOM05D010623 ORTHO05D012718 8.2e-77 292.0 375 47.7
DCAR_025007 Daucus carota HOM05D010623 ORTHO05D012718 1.1e-73 281.6 439 42.6
Lj7P559T50 Lonicera japonica HOM05D010623 ORTHO05D012718 4.6e-72 276.2 415 44.3
Dinv43969 Davidia involucrata HOM05D010623 ORTHO05D012718 3.0e-71 273.5 290 53.4
Nitab4.5_0006512g0040 Nicotiana tabacum HOM05D010623 ORTHO05D012718 2.9e-66 256.9 321 50.5
CAN.G1918.1 Capsicum annuum HOM05D010623 ORTHO05D012718 8.5e-66 255.4 300 51.3
Peaxi162Scf01343g00112 Petunia axillaris HOM05D010623 ORTHO05D012718 1.4e-65 254.6 294 48.6
Migut.B01424 Erythranthe guttata HOM05D010623 ORTHO05D012718 1.2e-64 251.5 333 46.2
SGA_v2.0_scaffold98G29380 Striga asiatica HOM05D010623 ORTHO05D012718 1.9e-62 244.2 417 40.5
PGSC0003DMG400025202 Solanum tuberosum HOM05D010623 ORTHO05D012718 1.7e-61 241.1 326 46.3
Solyc08g044390.1 Solanum lycopersicum HOM05D010623 ORTHO05D012718 1.8e-60 237.7 287 49.1
Sopen08g013570 Solanum pennellii HOM05D010623 ORTHO05D012718 4.5e-59 233.0 288 47.6
Nitab4.5_0000507g0020 Nicotiana tabacum HOM05D010623 ORTHO05D012718 1.2e-56 224.9 421 39.0
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 2.1e-56 224.2 341 42.8
Nn3g19189 Nelumbo nucifera HOM05D010623 ORTHO05D012718 2.2e-53 214.2 331 38.1
Actinidia10538 Actinidia chinensis HOM05D010623 ORTHO05D012718 4.2e-49 199.9 503 35.4
Actinidia31739 Actinidia chinensis HOM05D010623 ORTHO05D012718 3.5e-43 180.3 486 35.4
Rhsim09G0083400 Rhododendron simsii HOM05D006072 ORTHO05D007363 2.4e-20 104.4 294 29.9
Cc01_g19360 Coffea canephora HOM05D006072 ORTHO05D007363 7.8e-19 99.4 317 30.6
CSS0004323 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 1.7e-18 98.2 292 30.5
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.5e-17 95.1 284 28.5
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 1.2e-16 92.0 295 26.8
Medtr8g091400 Medicago truncatula HOM05D006072 ORTHO05D007363 1.6e-16 91.7 297 29.3
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.6e-16 91.7 303 27.4
DCAR_023269 Daucus carota HOM05D006072 ORTHO05D007363 2.8e-16 90.9 280 29.6
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 2.8e-16 90.9 366 25.4
QL06p050421 Quercus lobata HOM05D006072 ORTHO05D007363 3.6e-16 90.5 325 27.7
Psat7g053120 Pisum sativum HOM05D006072 ORTHO05D007363 4.7e-16 90.1 297 26.6
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 8.0e-16 89.4 360 25.8
Ca_17713_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 8.0e-16 89.4 296 29.1
Lalb_Chr07g0184981 Lupinus albus HOM05D006072 ORTHO05D007363 1.0e-15 89.0 321 27.4
Medtr4g075230 Medicago truncatula HOM05D006072 ORTHO05D007363 1.0e-15 89.0 345 27.2
Lj4g0019082 Lotus japonicus HOM05D006072 ORTHO05D007363 1.4e-15 88.6 337 26.7
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 1.8e-15 88.2 341 26.7
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 1.8e-15 88.2 341 26.7
Sabra07G0072700 Salix brachista HOM05D006072 ORTHO05D007363 1.8e-15 88.2 309 28.5
TAR622G0191 Trochodendron aralioides HOM05D006072 ORTHO05D007363 1.8e-15 88.2 300 27.7
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 2.3e-15 87.8 293 29.7
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 3.0e-15 87.4 317 26.5
Lsat_1_v5_gn_3_92501 Lactuca sativa HOM05D006072 ORTHO05D007363 3.0e-15 87.4 284 27.1
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 3.0e-15 87.4 327 27.2
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 3.0e-15 87.4 281 28.5
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 4.0e-15 87.0 327 27.5
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 4.0e-15 87.0 295 26.1
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 5.2e-15 86.7 343 25.9
Phvul.002G262300 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 5.2e-15 86.7 300 27.3
Duzib147G1157 Durio zibethinus HOM05D006072 ORTHO05D007363 6.8e-15 86.3 325 25.5
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 8.9e-15 85.9 338 27.2
Glyma.05G181300 Glycine max HOM05D006072 ORTHO05D007363 1.2e-14 85.5 326 27.0
Oeu042642.1 Olea europaea HOM05D000154 ORTHO05D000092 1.2e-14 85.5 65 66.2
ATR0598G294 Amborella trichopoda HOM05D006072 ORTHO05D007363 3.4e-14 84.0 357 26.6
Glyma.08G139000 Glycine max HOM05D006072 ORTHO05D007363 3.4e-14 84.0 328 26.5
Rhsim09G0083300 Rhododendron simsii HOM05D006072 ORTHO05D007363 3.4e-14 84.0 344 27.3
GSVIVG01011561001 Vitis vinifera HOM05D006072 ORTHO05D007363 4.4e-14 83.6 296 29.7
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 5.8e-14 83.2 302 27.2
VMungo0251G2066 Vigna mungo HOM05D006072 ORTHO05D007363 5.8e-14 83.2 302 25.8
CSS0011017 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 7.5e-14 82.8 283 27.2
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 7.5e-14 82.8 329 27.1
ECA246G2885 Erigeron canadensis HOM05D006072 ORTHO05D007363 9.8e-14 82.4 312 26.3
Eucgr.H00590 Eucalyptus grandis HOM05D006072 ORTHO05D007363 9.8e-14 82.4 279 27.6
PGR083G2817 Punica granatum HOM05D006072 ORTHO05D007363 9.8e-14 82.4 279 26.5
Gorai.008G103500 Gossypium raimondii HOM05D006072 ORTHO05D007363 1.3e-13 82.0 364 24.2
Potri.005G079500 Populus trichocarpa HOM05D006072 ORTHO05D007363 1.7e-13 81.6 303 26.7
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 2.9e-13 80.9 321 27.4
Dinv07032 Davidia involucrata HOM05D006072 ORTHO05D007363 4.9e-13 80.1 297 26.9
Gohir.D12G095100 Gossypium hirsutum HOM05D006072 ORTHO05D007363 4.9e-13 80.1 323 23.5
CiPaw.03G138500 Carya illinoinensis HOM05D006072 ORTHO05D007363 6.4e-13 79.7 301 26.6
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 6.4e-13 79.7 293 28.0
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 8.3e-13 79.3 332 27.1
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 1.4e-12 78.6 300 25.7
Manes.14G135600 Manihot esculenta HOM05D002727 ORTHO05D002856 1.9e-12 78.2 332 26.8
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 2.4e-12 77.8 275 27.6
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 3.2e-12 77.4 324 26.9
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 5.4e-12 76.6 313 26.2
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 7.0e-12 76.3 301 25.9
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 7.0e-12 76.3 307 29.0
Gohir.A12G093200 Gossypium hirsutum HOM05D006072 ORTHO05D007363 7.0e-12 76.3 364 25.0
MBI19_g02922_MAGBIO Magnolia biondii HOM05D006072 ORTHO05D007363 7.0e-12 76.3 288 25.0
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 9.2e-12 75.9 313 26.2
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 1.2e-11 75.5 287 25.8
CAN.G3.7 Capsicum annuum HOM05D006072 ORTHO05D007363 1.2e-11 75.5 337 25.8
Manes.12G138600 Manihot esculenta HOM05D006072 ORTHO05D007363 1.6e-11 75.1 366 26.0
CANSAT01G0770 Cannabis sativa HOM05D006072 ORTHO05D007363 2.0e-11 74.7 355 25.4
AUR62003481 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.0e-11 74.7 200 27.0
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 2.0e-11 74.7 343 23.3
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 6.0e-11 73.2 282 23.4
Lj1C912T6 Lonicera japonica HOM05D010623 ORTHO05D012718 1.3e-10 72.0 121 38.0
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 2.3e-10 71.2 318 26.1
ATR0598G249 Amborella trichopoda HOM05D006072 ORTHO05D007363 3.0e-10 70.9 321 23.7
AUR62015493 Chenopodium quinoa HOM05D006072 ORTHO05D007363 3.9e-10 70.5 239 26.4
Sed0008746 Sechium edule HOM05D002727 ORTHO05D002856 5.0e-10 70.1 294 27.2
ATR0598G256 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.1e-09 68.9 325 24.9
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.1e-09 68.9 284 25.0
Os02g0491300 Oryza sativa ssp. japonica HOM05D006072 ORTHO05D007363 4.3e-09 67.0 325 26.8
Migut.D00310 Erythranthe guttata HOM05D006072 ORTHO05D007363 5.6e-09 66.6 299 26.4
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 5.6e-09 66.6 309 25.2
Dinv12556 Davidia involucrata HOM05D006072 ORTHO05D007363 3.6e-08 63.9 157 31.8
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 3.6e-08 63.9 122 30.3
Lsat_1_v5_gn_5_36701 Lactuca sativa HOM05D006072 ORTHO05D007363 4.7e-08 63.5 305 25.2
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 8.0e-08 62.8 236 22.5
Dinv16779 Davidia involucrata HOM05D006072 ORTHO05D007363 1.1e-07 62.4 232 26.7
Ah.09g224330 Amaranthus hybridus HOM05D006072 ORTHO05D007363 1.4e-07 62.0 235 26.4
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 1.5e-06 58.5 306 22.5
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 5.8e-06 56.6 311 23.5


User provided reference genes

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