Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 2.8e-52 208.4 109 100.0
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 4.5e-42 174.5 91 98.9
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 5.9e-42 174.1 94 95.7
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.0e-41 173.3 93 96.8
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 8.0e-39 163.7 91 91.2
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 8.0e-39 163.7 91 91.2
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.0e-38 163.3 91 91.2
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 1.8e-38 162.5 89 91.0
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 3.0e-38 161.8 89 91.0
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 4.0e-38 161.4 91 90.1
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 8.8e-38 160.2 91 90.1
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 1.2e-37 159.8 89 89.9
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 1.2e-37 159.8 92 87.0
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 1.5e-37 159.5 96 82.3
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 2.6e-37 158.7 91 87.9
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 3.3e-37 158.3 91 86.8
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 3.3e-37 158.3 91 84.6
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 4.4e-37 157.9 91 86.8
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 7.5e-37 157.1 91 86.8
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 7.5e-37 157.1 91 86.8
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 2.2e-36 155.6 95 82.1
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 2.2e-36 155.6 91 86.8
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 2.8e-36 155.2 85 90.6
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 3.7e-36 154.8 91 85.7
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 4.8e-36 154.5 85 89.4
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 4.8e-36 154.5 90 85.6
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 6.3e-36 154.1 89 88.8
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 6.3e-36 154.1 90 85.6
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 6.3e-36 154.1 90 85.6
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 8.2e-36 153.7 93 79.6
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 8.2e-36 153.7 91 84.6
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 2.4e-35 152.1 91 85.7
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 2.4e-35 152.1 91 84.6
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 4.1e-35 151.4 92 83.7
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 7.0e-35 150.6 92 81.5
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 7.0e-35 150.6 90 83.3
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 7.0e-35 150.6 90 83.3
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 2.0e-34 149.1 91 83.5
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 2.7e-34 148.7 93 83.9
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 4.5e-34 147.9 91 82.4
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 4.5e-34 147.9 91 81.3
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 4.5e-34 147.9 91 81.3
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 4.5e-34 147.9 91 81.3
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 5.9e-34 147.5 91 81.3
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 5.9e-34 147.5 91 79.1
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 7.7e-34 147.1 91 82.4
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 7.7e-34 147.1 88 80.7
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 1.0e-33 146.7 88 80.7
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.3e-33 146.4 90 82.2
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 1.3e-33 146.4 107 72.9
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.7e-33 146.0 89 80.9
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 2.2e-33 145.6 86 82.6
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 1.1e-32 143.3 91 79.1
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.5e-32 142.9 91 80.2
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 1.9e-32 142.5 86 82.6
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 4.2e-32 141.4 86 79.1
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 4.2e-32 141.4 91 79.1
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.2e-31 139.8 89 78.7
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.6e-31 139.4 91 78.0
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 2.1e-31 139.0 86 81.4
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 6.1e-31 137.5 90 77.8
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 8.0e-31 137.1 82 84.1
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 8.0e-31 137.1 87 78.2
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 1.0e-30 136.7 86 79.1
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 1.4e-30 136.3 82 82.9
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 2.3e-30 135.6 89 78.7
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 4.0e-30 134.8 86 76.7
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 5.2e-30 134.4 90 75.6
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 5.2e-30 134.4 90 72.2
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.5e-29 132.9 89 73.0
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 1.5e-29 132.9 90 74.4
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 4.4e-29 131.3 85 77.6
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 5.7e-29 131.0 88 73.9
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 5.7e-29 131.0 86 73.3
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 9.8e-29 130.2 90 74.4
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 9.8e-29 130.2 87 73.6
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 2.8e-28 128.6 83 78.3
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 6.3e-28 127.5 89 74.2
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 8.3e-28 127.1 83 75.9
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 1.8e-27 125.9 83 75.9
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 1.8e-27 125.9 81 75.3
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 2.4e-27 125.6 74 83.8
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.1e-27 125.2 83 77.1
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 3.1e-27 125.2 83 74.7
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 4.1e-27 124.8 89 71.9
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 1.6e-26 122.9 88 69.3
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 1.3e-25 119.8 88 71.6
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 1.7e-25 119.4 89 71.9
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 1.7e-25 119.4 89 67.4
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 4.2e-24 114.8 71 78.9
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 4.2e-24 114.8 83 69.9
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 7.2e-24 114.0 91 69.2
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 9.5e-24 113.6 85 65.9
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 6.1e-23 110.9 84 65.5
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 8.0e-23 110.5 84 65.5
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 1.8e-22 109.4 84 64.3
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 1.2e-21 106.7 65 80.0
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 2.0e-21 105.9 82 63.4
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 2.6e-21 105.5 82 63.4
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 3.4e-21 105.1 82 62.2
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 3.4e-21 105.1 91 56.0
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 3.4e-21 105.1 91 56.0
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 4.4e-21 104.8 79 67.1
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 5.7e-21 104.4 82 61.0
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 5.7e-21 104.4 82 61.0
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 1.3e-20 103.2 60 86.7
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 1.3e-20 103.2 86 61.6
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 2.2e-20 102.4 82 59.8
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 2.8e-20 102.1 87 58.6
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 3.7e-20 101.7 82 59.8
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 3.7e-20 101.7 82 59.8
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 8.6e-17 90.5 50 92.0
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 1.1e-16 90.1 51 86.3
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 4.7e-15 84.7 66 65.2
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 6.1e-15 84.3 68 63.2
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.8e-14 82.8 60 73.3
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 1.8e-14 82.8 49 81.6
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 2.3e-14 82.4 82 52.4
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.5e-13 79.7 70 64.3
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 1.5e-13 79.7 80 58.8
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 2.0e-13 79.3 82 52.4
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 2.6e-13 79.0 60 66.7
PSO017G6472 Papaver somniferum HOM05D006477 ORTHO05D008311 3.0e-09 65.5 62 53.2
PSO017G6604 Papaver somniferum HOM05D006477 ORTHO05D008311 3.0e-09 65.5 62 53.2


User provided reference genes

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