Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.2e-92 343.2 173 100.0
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.2e-92 343.2 173 100.0
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.2e-92 343.2 173 100.0
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.6e-89 332.8 173 97.1
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 3.5e-81 305.1 173 89.0
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 4.6e-81 304.7 178 88.8
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 2.9e-75 285.4 173 82.7
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.4e-74 282.3 173 82.1
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 2.4e-74 282.3 168 83.9
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 5.4e-74 281.2 173 81.5
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 9.3e-74 280.4 173 81.5
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 4.6e-73 278.1 174 82.2
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 4.6e-73 278.1 173 80.3
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 6.0e-73 277.7 171 79.5
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.0e-72 275.4 173 80.9
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 8.7e-72 273.9 173 79.8
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 8.7e-72 273.9 173 80.3
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 8.7e-72 273.9 181 78.5
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.1e-71 273.5 173 79.2
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.5e-71 273.1 173 79.2
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 2.5e-71 272.3 174 79.3
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 3.3e-71 271.9 174 81.6
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 3.3e-71 271.9 175 79.4
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 3.3e-71 271.9 175 78.3
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 4.3e-71 271.6 175 78.9
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 7.3e-71 270.8 173 79.8
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 7.3e-71 270.8 174 78.2
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 7.3e-71 270.8 175 77.7
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 9.6e-71 270.4 178 78.7
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.6e-70 269.6 174 78.7
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.6e-70 269.6 174 78.7
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 3.6e-70 268.5 171 80.7
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 4.8e-70 268.1 173 76.3
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.1e-69 266.9 173 77.5
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.4e-69 266.5 181 76.2
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.8e-69 266.2 173 77.5
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.1e-69 265.4 175 76.0
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.1e-69 265.4 172 76.2
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 5.3e-69 264.6 173 76.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.2e-68 263.5 163 78.5
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.5e-68 263.1 173 77.5
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.5e-68 263.1 173 74.6
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 2.0e-68 262.7 170 77.6
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.6e-68 262.3 173 74.6
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.5e-68 261.5 220 67.7
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 5.8e-68 261.2 165 78.2
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 5.8e-68 261.2 173 74.6
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 5.8e-68 261.2 159 79.9
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 7.6e-68 260.8 209 68.9
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 7.6e-68 260.8 170 77.1
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 7.6e-68 260.8 173 74.6
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 9.9e-68 260.4 179 75.4
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 9.9e-68 260.4 168 75.0
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 9.9e-68 260.4 170 78.2
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 9.9e-68 260.4 175 75.4
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.7e-67 259.6 202 68.8
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.7e-67 259.6 173 75.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.7e-67 259.6 173 72.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 3.8e-67 258.5 159 78.0
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.9e-67 258.1 202 68.3
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.9e-67 258.1 202 68.3
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 4.9e-67 258.1 197 70.1
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.4e-67 257.7 159 77.4
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.4e-66 256.5 172 73.3
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.9e-66 256.1 159 76.7
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.9e-66 256.1 159 77.4
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.9e-66 256.1 173 72.8
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 3.2e-66 255.4 179 74.9
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 3.2e-66 255.4 169 77.5
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 4.2e-66 255.0 173 72.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 7.1e-66 254.2 161 78.3
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 72.3
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 72.3
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 3.5e-65 251.9 174 73.6
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 4.6e-65 251.5 171 74.9
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 7.9e-65 250.8 171 71.9
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.0e-64 250.4 173 71.1
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.3e-64 250.0 173 71.1
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.3e-64 250.0 174 73.0
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 3.0e-64 248.8 173 71.7
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.9e-64 248.4 173 71.1
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 6.7e-64 247.7 173 71.1
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 8.7e-64 247.3 183 68.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.9e-63 246.1 173 70.5
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.5e-63 245.7 173 70.5
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.6e-63 244.6 159 75.5
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 5.6e-63 244.6 173 69.9
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 7.4e-63 244.2 173 69.9
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 7.4e-63 244.2 173 69.9
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 7.4e-63 244.2 173 69.9
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 9.6e-63 243.8 173 69.4
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 9.6e-63 243.8 173 69.9
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.3e-62 243.4 173 69.9
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.6e-62 243.0 173 69.4
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.8e-62 242.3 173 68.8
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 2.8e-62 242.3 173 68.8
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 3.7e-62 241.9 164 72.6
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 3.7e-62 241.9 165 74.5
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.8e-62 241.5 174 69.5
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 6.2e-62 241.1 164 72.6
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 6.2e-62 241.1 164 72.6
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.1e-61 240.4 174 70.7
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.4e-61 239.2 171 68.4
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 4.5e-60 235.0 177 69.5
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 4.5e-60 235.0 144 80.6
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 3.8e-59 231.9 227 56.8
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 6.5e-59 231.1 167 67.7
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.4e-58 229.9 167 67.7
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.1e-58 227.6 139 79.9
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 2.1e-57 226.1 193 65.8
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 2.7e-57 225.7 173 63.6
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.0e-57 224.6 211 59.7
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.3e-56 222.6 264 50.4
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.1e-56 221.5 120 89.2
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.4e-53 213.4 184 65.2
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 5.5e-50 201.4 174 62.6
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.6e-46 189.9 173 62.4
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 3.1e-45 185.7 113 76.1
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 5.3e-45 184.9 171 56.1
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 3.0e-40 169.1 135 61.5
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.2e-38 162.9 109 72.5
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 4.8e-38 161.8 98 81.6
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.5e-36 156.8 116 67.2
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 4.5e-36 155.2 139 51.1
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 7.7e-36 154.5 110 70.0
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.7e-35 153.3 109 71.6
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 2.5e-34 149.4 119 66.4
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 6.7e-32 141.4 152 44.1
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 9.7e-31 137.5 118 63.6
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.7e-30 136.7 106 63.2
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.6e-28 129.4 100 65.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 3.8e-27 125.6 103 62.1
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 6.1e-25 118.2 80 68.8
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 6.1e-25 118.2 80 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 3.0e-24 115.9 120 43.3
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.6e-23 112.8 63 87.3
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.1e-21 107.5 81 67.9
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.1e-21 105.9 104 54.8
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 5.3e-21 105.1 61 82.0
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.3e-21 105.1 64 79.7
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.0e-20 103.2 110 40.0
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.3e-19 100.5 106 51.9
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 8.5e-19 97.8 65 70.8
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 1.5e-18 97.1 104 41.3
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 3.2e-18 95.9 65 69.2
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.2e-17 94.0 84 52.4
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 6.1e-17 91.7 106 44.3
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 9.8e-15 84.3 151 33.8
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 2.8e-14 82.8 50 80.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.4e-13 79.7 104 47.1
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 3.7e-06 55.8 32 84.4


User provided reference genes

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