Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 6.0e-135 484.6 319 100.0
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 2.6e-53 213.4 144 77.1
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 1.4e-46 191.0 179 60.9
Rhsim07G0038700 Rhododendron simsii HOM05D001455 ORTHO05D002670 1.6e-42 177.6 90 98.9
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 1.1e-40 171.4 144 65.3
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 2.1e-39 167.2 144 63.9
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 2.8e-39 166.8 148 60.1
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 1.1e-35 154.8 361 50.1
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 9.2e-35 151.8 105 69.5
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 2.0e-34 150.6 148 54.7
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 2.7e-34 150.2 148 54.1
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 1.7e-33 147.5 150 52.0
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 2.3e-33 147.1 148 52.7
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 3.0e-33 146.7 148 53.4
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 3.9e-33 146.4 148 55.4
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 5.0e-33 146.0 105 70.5
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 5.0e-33 146.0 148 54.7
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 6.6e-33 145.6 148 53.4
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 8.6e-33 145.2 148 52.7
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 8.6e-33 145.2 149 49.7
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 1.9e-32 144.1 148 52.0
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 3.3e-32 143.3 148 51.4
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 5.6e-32 142.5 148 54.1
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 5.6e-32 142.5 105 66.7
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 1.2e-31 141.4 148 52.0
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 1.2e-31 141.4 356 48.6
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 2.1e-31 140.6 148 48.6
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 6.2e-31 139.0 148 51.4
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 8.0e-31 138.7 145 51.7
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 8.0e-31 138.7 148 50.0
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 1.0e-30 138.3 150 45.3
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 1.0e-30 138.3 148 50.7
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 1.8e-30 137.5 148 48.0
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 2.3e-30 137.1 148 51.4
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 4.0e-30 136.3 146 50.7
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 4.0e-30 136.3 158 48.7
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 4.0e-30 136.3 150 50.7
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 8.9e-30 135.2 148 49.3
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 8.9e-30 135.2 148 50.7
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 8.9e-30 135.2 105 67.6
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 1.2e-29 134.8 145 52.4
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 1.5e-29 134.4 148 48.0
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 2.6e-29 133.7 148 48.0
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 2.6e-29 133.7 148 48.0
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 2.6e-29 133.7 150 44.0
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 4.4e-29 132.9 148 49.3
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 5.8e-29 132.5 148 50.7
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 9.8e-29 131.7 141 48.2
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 9.8e-29 131.7 337 48.1
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 1.3e-28 131.3 150 48.0
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 2.2e-28 130.6 150 45.3
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 2.9e-28 130.2 152 48.0
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 4.9e-28 129.4 335 50.4
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 6.4e-28 129.0 149 47.0
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 8.3e-28 128.6 146 48.6
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 8.3e-28 128.6 146 48.6
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 1.4e-27 127.9 346 47.7
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 3.2e-27 126.7 146 47.9
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 5.4e-27 125.9 336 47.3
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 5.4e-27 125.9 359 45.7
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 7.0e-27 125.6 150 48.7
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 7.0e-27 125.6 148 43.9
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 7.0e-27 125.6 337 47.2
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 1.6e-26 124.4 148 48.0
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 1.6e-26 124.4 148 45.9
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 2.7e-26 123.6 165 45.5
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 4.6e-26 122.9 144 48.6
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 4.6e-26 122.9 148 44.6
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 8.6e-25 118.6 136 44.1
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 6.8e-22 109.0 150 40.0
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 2.0e-21 107.5 111 53.2
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 4.4e-21 106.3 148 41.2
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 1.7e-20 104.4 354 44.6
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 6.4e-20 102.4 95 50.5
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 1.1e-19 101.7 89 56.2
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 5.4e-19 99.4 148 41.9
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 9.2e-19 98.6 111 49.5
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 2.7e-18 97.1 88 55.7
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 3.5e-18 96.7 102 50.0
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 6.0e-18 95.9 88 54.5
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 7.8e-18 95.5 148 38.5
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 7.8e-18 95.5 146 39.7
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 5.1e-17 92.8 85 50.6
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 5.6e-16 89.4 148 37.8
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 5.2e-14 82.8 73 52.1
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 5.8e-13 79.3 69 47.8
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 2.4e-11 73.9 100 43.0
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 6.0e-10 69.3 100 43.0
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 8.6e-09 65.5 140 32.9
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 2.5e-08 63.9 85 43.5


User provided reference genes

Program Settings