Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 0.0e+00 1134.0 566 100.0
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 3.9e-206 721.8 506 76.9
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.1e-192 677.2 530 68.5
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 2.6e-189 666.0 540 66.5
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 1.1e-168 597.4 521 62.6
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 6.2e-167 591.7 524 61.6
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 6.8e-166 588.2 521 60.7
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 1.2e-165 587.4 495 61.8
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 1.5e-165 587.0 468 64.7
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 1.4e-163 580.5 493 62.3
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 3.2e-163 579.3 456 65.6
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 7.0e-163 578.2 494 60.3
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 7.8e-162 574.7 469 64.2
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 1.0e-161 574.3 511 60.7
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 1.0e-161 574.3 470 62.3
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 1.7e-161 573.5 494 60.1
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 2.3e-161 573.2 474 63.5
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 3.0e-161 572.8 519 61.1
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 3.0e-161 572.8 458 67.0
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 1.1e-160 570.9 511 58.7
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 2.5e-160 569.7 359 77.2
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 4.3e-160 568.9 515 60.6
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 5.6e-160 568.5 524 59.5
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 1.2e-159 567.4 503 60.2
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 1.2e-159 567.4 493 61.1
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 2.8e-159 566.2 469 62.9
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 2.8e-159 566.2 469 62.9
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.6e-159 565.8 503 60.2
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 4.7e-159 565.5 526 58.9
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 6.2e-159 565.1 527 58.4
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 6.2e-159 565.1 474 63.7
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 6.2e-159 565.1 476 63.7
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 6.2e-159 565.1 503 60.2
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.2e-159 565.1 450 64.2
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 1.1e-158 564.3 511 59.1
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.4e-158 563.9 513 59.6
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.4e-158 563.9 503 60.2
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.1e-158 562.8 503 60.0
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 6.8e-158 561.6 474 62.7
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.8e-158 561.6 503 60.0
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 6.8e-158 561.6 501 60.5
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 6.8e-158 561.6 512 59.2
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 2.6e-157 559.7 518 57.7
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 2.6e-157 559.7 384 71.6
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 7.5e-157 558.1 517 59.0
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 1.7e-156 557.0 511 59.1
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 1.7e-156 557.0 513 59.6
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 1.7e-156 557.0 532 58.6
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 2.9e-156 556.2 521 58.5
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 3.7e-156 555.8 523 59.5
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 5.4e-155 552.0 513 59.6
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 7.1e-155 551.6 546 55.7
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 1.0e-153 547.7 495 60.4
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 1.7e-153 547.0 452 61.3
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 3.9e-153 545.8 517 58.8
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 5.1e-153 545.4 511 57.1
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 5.1e-153 545.4 501 58.7
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 4.3e-152 542.3 474 61.4
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 4.3e-152 542.3 527 56.2
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 2.1e-151 540.0 510 58.0
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.7e-151 538.9 552 54.9
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 8.1e-151 538.1 451 61.9
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 1.8e-150 537.0 508 58.3
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 2.3e-150 536.6 452 62.2
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 3.1e-150 536.2 455 60.4
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 6.8e-150 535.0 511 55.8
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 1.2e-149 534.3 449 61.9
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 1.2e-149 534.3 449 61.9
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 1.5e-149 533.9 506 57.7
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 9.9e-149 531.2 457 60.4
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 2.2e-148 530.0 466 60.3
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 2.9e-148 529.6 343 73.8
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.9e-148 529.6 550 52.7
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 8.4e-148 528.1 452 61.7
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 1.1e-147 527.7 517 55.7
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 1.4e-147 527.3 519 57.4
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 5.4e-147 525.4 515 56.7
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 9.2e-147 524.6 517 56.5
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 2.1e-146 523.5 456 60.1
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 6.0e-146 521.9 527 55.4
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 3.0e-145 519.6 550 55.1
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 1.5e-141 507.3 377 65.5
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 7.6e-141 505.0 464 57.3
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 7.6e-141 505.0 525 54.9
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 3.8e-140 502.7 467 58.0
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 1.6e-138 497.3 519 55.5
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 6.6e-137 491.9 432 61.1
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 5.6e-136 488.8 460 56.1
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 1.5e-133 480.7 472 55.5
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 1.7e-132 477.2 455 57.4
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 8.4e-132 474.9 398 61.8
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 1.1e-131 474.6 520 54.8
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 2.3e-129 466.8 454 55.5
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 2.5e-128 463.4 711 42.2
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 1.9e-123 447.2 399 59.9
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 1.4e-110 404.4 241 78.4
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 3.6e-106 389.8 324 59.0
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 4.7e-90 336.3 223 73.5
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 1.2e-82 311.6 176 80.7
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 3.6e-74 283.5 346 49.4
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 1.0e-73 282.0 165 79.4
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 5.7e-72 276.2 335 49.3
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 2.4e-70 270.8 318 50.6
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 2.0e-69 267.7 318 48.7
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 1.4e-65 255.0 453 36.2
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 6.8e-65 252.7 209 55.0
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 2.4e-62 244.2 145 77.2
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 2.3e-52 211.1 623 28.9
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 6.8e-49 199.5 231 44.6
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 7.5e-48 196.1 437 30.7
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 7.3e-43 179.5 230 45.2
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 1.0e-36 159.1 177 51.4
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 8.9e-33 146.0 352 29.5
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 2.8e-26 124.4 196 38.3
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 7.6e-24 116.3 82 62.2
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 1.3e-23 115.5 66 78.8
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 3.5e-21 107.5 109 52.3
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 6.9e-17 93.2 135 43.7
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 1.5e-16 92.0 53 75.5
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 1.3e-12 79.0 143 34.3
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 2.1e-10 71.6 42 71.4
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 2.1e-10 71.6 153 32.7
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 4.0e-09 67.4 48 72.9
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 3.4e-08 64.3 42 66.7
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 7.6e-08 63.2 65 60.0
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 2.4e-06 58.2 58 48.3
BcaC02g11397 Brassica carinata HOM05D006344 ORTHO05D007744 5.5e-06 57.0 40 67.5


User provided reference genes

Program Settings