Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0028500 Rhododendron simsii HOM05D005605 ORTHO05D007615 1.3e-255 885.9 452 100.0
Rhsim11G0177400 Rhododendron simsii HOM05D005605 ORTHO05D007615 4.5e-152 542.0 628 54.5
CSS0012215 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 1.8e-116 423.7 574 46.7
vmacro02103 Vaccinium macrocarpon HOM05D005605 ORTHO05D007615 2.3e-116 423.3 581 47.7
CSS0037419 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 1.5e-115 420.6 574 46.5
Hma1.2p1_0066F.1_g036390 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 1.6e-104 384.0 547 45.2
PGSC0003DMG400000727 Solanum tuberosum HOM05D005605 ORTHO05D007615 4.4e-99 365.9 570 42.3
Solyc01g109630.4 Solanum lycopersicum HOM05D005605 ORTHO05D007615 1.2e-96 357.8 565 41.6
Sopen01g051820 Solanum pennellii HOM05D005605 ORTHO05D007615 1.6e-96 357.5 565 41.4
CAN.G1412.8 Capsicum annuum HOM05D005605 ORTHO05D007615 5.9e-96 355.5 566 41.9
CSS0044100 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 6.6e-95 352.1 588 42.3
CSS0010527 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 5.5e-94 349.0 588 42.2
Lj5C196G6 Lonicera japonica HOM05D005605 ORTHO05D007615 7.2e-94 348.6 561 41.4
CANSAT01G2366 Cannabis sativa HOM05D005605 ORTHO05D007615 1.2e-93 347.8 573 39.4
CiPaw.05G064700 Carya illinoinensis HOM05D005605 ORTHO05D007615 2.8e-93 346.7 594 40.6
TAR628G1411 Trochodendron aralioides HOM05D005605 ORTHO05D007615 4.4e-91 339.3 575 40.7
MELO3C012521.2 Cucumis melo HOM05D005605 ORTHO05D007615 6.3e-90 335.5 596 40.4
ClCG02G005000 Citrullus lanatus HOM05D005605 ORTHO05D007615 1.8e-89 334.0 589 40.2
Lj3g0011747 Lotus japonicus HOM05D005605 ORTHO05D007615 3.1e-89 333.2 574 38.9
Cfa004997 Carpinus fangiana HOM05D005605 ORTHO05D007615 4.1e-89 332.8 562 40.0
Haze_02388 Corylus avellana HOM05D005605 ORTHO05D007615 5.4e-89 332.4 611 38.6
TPR.G19396 Trifolium pratense HOM05D005605 ORTHO05D007615 1.6e-88 330.9 546 40.5
CsaV3_7G023590 Cucumis sativus L. HOM05D005605 ORTHO05D007615 2.0e-88 330.5 587 40.0
Glyma.12G043100 Glycine max HOM05D005605 ORTHO05D007615 1.7e-87 327.4 557 38.4
Psat7g141400 Pisum sativum HOM05D005605 ORTHO05D007615 3.8e-87 326.2 560 39.8
Ah.01g006280 Amaranthus hybridus HOM05D005605 ORTHO05D007615 5.0e-87 325.9 558 38.9
Sed0006971 Sechium edule HOM05D005605 ORTHO05D007615 8.6e-87 325.1 568 40.1
arahy.Tifrunner.gnm1.ann1.XL89DC Arachis hypogaea HOM05D005605 ORTHO05D007615 1.5e-86 324.3 592 38.7
Prupe.8G096600 Prunus persica HOM05D005605 ORTHO05D007615 1.5e-86 324.3 553 40.9
Eucgr.I01271 Eucalyptus grandis HOM05D005605 ORTHO05D007615 1.9e-86 323.9 583 40.3
Cc02_g17560 Coffea canephora HOM05D005605 ORTHO05D007615 2.5e-86 323.6 504 42.1
HanXRQChr11g0343841 Helianthus annuus HOM05D005605 ORTHO05D007615 2.5e-86 323.6 568 38.7
Ca_20877_v3 Cicer arietinum L. HOM05D005605 ORTHO05D007615 4.3e-86 322.8 585 37.8
Medtr4g070060 Medicago truncatula HOM05D005605 ORTHO05D007615 5.6e-86 322.4 465 44.3
Aqoxy6G01115 Aquilegia oxysepala HOM05D005605 ORTHO05D007615 7.3e-86 322.0 562 38.8
VMungo1127G2130 Vigna mungo HOM05D005605 ORTHO05D007615 1.2e-85 321.2 553 38.3
Oeu015995.1 Olea europaea HOM05D005605 ORTHO05D007615 6.1e-85 318.9 583 37.9
THA.LOC104824826 Tarenaya hassleriana HOM05D005605 ORTHO05D007615 3.1e-84 316.6 559 38.5
TWI31G1015 Tripterygium wilfordii HOM05D005605 ORTHO05D007615 3.1e-84 316.6 594 38.0
Thhalv10000085m.g Eutrema salsugineum HOM05D005605 ORTHO05D007615 4.0e-84 316.2 557 38.8
AL4G10940 Arabidopsis lyrata HOM05D005605 ORTHO05D007615 6.8e-84 315.5 565 38.4
PGR142G2567 Punica granatum HOM05D005605 ORTHO05D007615 6.8e-84 315.5 548 40.0
BcaC07g41121 Brassica carinata HOM05D005605 ORTHO05D007615 1.2e-83 314.7 573 37.9
A09p58000 Brassica napus HOM05D005605 ORTHO05D007615 1.2e-83 314.7 560 38.0
BolC8t51688H Brassica oleracea HOM05D005605 ORTHO05D007615 1.2e-83 314.7 573 37.9
AT2G21710 Arabidopsis thaliana HOM05D005605 ORTHO05D007615 1.5e-83 314.3 557 38.4
BraA09t41190Z Brassica rapa HOM05D005605 ORTHO05D007615 1.5e-83 314.3 560 38.0
RcHm_v2.0_Chr6g0264281 Rosa chinensis HOM05D005605 ORTHO05D007615 4.4e-83 312.8 556 39.9
Gorai.013G037000 Gossypium raimondii HOM05D005605 ORTHO05D007615 7.5e-83 312.0 571 38.4
C08p41210 Brassica napus HOM05D005605 ORTHO05D007615 9.8e-83 311.6 578 37.5
Potri.009G116200 Populus trichocarpa HOM05D005605 ORTHO05D007615 9.8e-83 311.6 587 37.5
Hund00267 Selenicereus undatus HOM05D005605 ORTHO05D007615 1.3e-82 311.2 567 37.7
Migut.B00234 Erythranthe guttata HOM05D005605 ORTHO05D007615 2.2e-82 310.5 589 37.2
BcaB08g35002 Brassica carinata HOM05D005605 ORTHO05D007615 2.9e-82 310.1 553 37.8
Gohir.D13G032600 Gossypium hirsutum HOM05D005605 ORTHO05D007615 2.9e-82 310.1 565 37.7
Gohir.A13G034200 Gossypium hirsutum HOM05D005605 ORTHO05D007615 3.7e-82 309.7 568 38.4
GSVIVG01031970001 Vitis vinifera HOM05D005605 ORTHO05D007615 3.7e-82 309.7 501 41.3
Cfa005000 Carpinus fangiana HOM05D005605 ORTHO05D007615 2.4e-81 307.0 500 40.4
arahy.Tifrunner.gnm1.ann1.IZ1QNN Arachis hypogaea HOM05D005605 ORTHO05D007615 5.4e-81 305.8 577 37.6
FAN20G2643 Fragaria x ananassa HOM05D005605 ORTHO05D007615 7.0e-81 305.4 551 40.3
Sp4g00860 Schrenkiella parvula HOM05D005605 ORTHO05D007615 7.0e-81 305.4 598 36.6
FvH4_2g08810 Fragaria vesca HOM05D005605 ORTHO05D007615 9.2e-81 305.1 556 39.4
FAN15G0883 Fragaria x ananassa HOM05D005605 ORTHO05D007615 1.2e-80 304.7 556 39.4
ECA248G2826 Erigeron canadensis HOM05D005605 ORTHO05D007615 1.0e-79 301.6 545 38.3
Sabra09G0089200 Salix brachista HOM05D005605 ORTHO05D007615 1.0e-79 301.6 590 37.1
Cfa004998 Carpinus fangiana HOM05D005605 ORTHO05D007615 3.0e-79 300.1 451 43.2
MD05G1066000 Malus domestica HOM05D005605 ORTHO05D007615 3.0e-79 300.1 539 39.3
Nitab4.5_0000308g0140 Nicotiana tabacum HOM05D005605 ORTHO05D007615 3.0e-79 300.1 528 40.0
Peaxi162Scf00016g00735 Petunia axillaris HOM05D005605 ORTHO05D007615 3.0e-79 300.1 570 38.1
Aa31LG7G14820 Aethionema arabicum HOM05D005605 ORTHO05D007615 3.9e-79 299.7 571 37.1
Lsat_1_v5_gn_1_111380 Lactuca sativa HOM05D005605 ORTHO05D007615 3.9e-79 299.7 546 39.6
FAN24G2665 Fragaria x ananassa HOM05D005605 ORTHO05D007615 5.0e-79 299.3 556 39.0
QL11p043893 Quercus lobata HOM05D005605 ORTHO05D007615 2.1e-77 293.9 576 37.0
Carub.0004s0075 Capsella rubella HOM05D005605 ORTHO05D007615 3.1e-76 290.0 559 36.9
Manes.17G101300 Manihot esculenta HOM05D005605 ORTHO05D007615 3.2e-73 280.0 567 36.0
Nitab4.5_0004172g0020 Nicotiana tabacum HOM05D005605 ORTHO05D007615 1.2e-72 278.1 572 36.9
MSTRG.20083 Avicennia marina HOM05D005605 ORTHO05D007615 1.3e-71 274.6 562 35.9
MBI02_g03744_MAGBIO Magnolia biondii HOM05D005605 ORTHO05D007615 2.3e-71 273.9 583 35.0
Haze_02444 Corylus avellana HOM05D005605 ORTHO05D007615 1.1e-70 271.6 355 44.8
Duzib052G1004 Durio zibethinus HOM05D005605 ORTHO05D007615 1.5e-70 271.2 561 35.3
Cpa.g.sc62.154 Carica papaya HOM05D005605 ORTHO05D007615 2.5e-70 270.4 575 35.7
Haze_02391 Corylus avellana HOM05D005605 ORTHO05D007615 1.2e-69 268.1 496 38.1
PSO541G1874 Papaver somniferum HOM05D005605 ORTHO05D007615 1.1e-68 265.0 579 35.1
Phvul.011G045100 Phaseolus vulgaris HOM05D005605 ORTHO05D007615 2.3e-68 263.8 272 52.9
PSO675G3023 Papaver somniferum HOM05D005605 ORTHO05D007615 8.9e-68 261.9 572 35.0
AUR62011322 Chenopodium quinoa HOM05D005605 ORTHO05D007615 1.5e-67 261.2 515 36.1
Glyma.11G117700 Glycine max HOM05D005605 ORTHO05D007615 5.8e-67 259.2 271 52.4
Sc18g0004450 Simmondsia chinensis HOM05D005605 ORTHO05D007615 1.3e-66 258.1 554 34.1
Dinv23519 Davidia involucrata HOM05D005605 ORTHO05D007615 6.4e-66 255.8 593 34.9
DCAR_001580 Daucus carota HOM05D005605 ORTHO05D007615 1.9e-65 254.2 573 33.9
Actinidia00525 Actinidia chinensis HOM05D005605 ORTHO05D007615 6.0e-64 249.2 524 36.6
COL.COLO4_25933 Corchorus olitorius HOM05D005605 ORTHO05D007615 1.5e-62 244.6 493 35.5
ATR0772G053 Amborella trichopoda HOM05D005605 ORTHO05D007615 5.6e-62 242.7 540 31.7
AUR62016738 Chenopodium quinoa HOM05D005605 ORTHO05D007615 1.1e-60 238.4 473 34.9
Ciclev10028120m.g Citrus clementina HOM05D005605 ORTHO05D007615 5.8e-59 232.6 500 35.0
unitig_0.g65 Utricularia gibba HOM05D005605 ORTHO05D007615 2.1e-56 224.2 457 34.1
Lalb_Chr03g0025671 Lupinus albus HOM05D005605 ORTHO05D007615 1.3e-55 221.5 576 31.9
CARHR112700 Cardamine hirsuta HOM05D005605 ORTHO05D007615 2.3e-55 220.7 383 36.8
Nn5g29612 Nelumbo nucifera HOM05D005605 ORTHO05D007615 3.6e-53 213.4 550 32.2
EL10Ac9g21723 Beta vulgaris HOM05D005605 ORTHO05D007615 1.4e-52 211.5 608 31.2
Atru.chr5.3019 Acer truncatum HOM05D005605 ORTHO05D007615 4.0e-52 209.9 554 31.0
SGA_v2.0_scaffold58G20533 Striga asiatica HOM05D005605 ORTHO05D007615 2.4e-49 200.7 545 31.4
BcaC07g41120 Brassica carinata HOM05D005605 ORTHO05D007615 1.7e-47 194.5 407 34.6
Hma1.2p1_0066F.1_g036400 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 3.7e-37 160.2 325 36.6
Thecc.02G085000 Theobroma cacao HOM05D005605 ORTHO05D007615 4.0e-36 156.8 218 44.0
Haze_02436 Corylus avellana HOM05D005605 ORTHO05D007615 1.0e-34 152.1 316 34.8
Os07g0134700 Oryza sativa ssp. japonica HOM05D005605 ORTHO05D007615 4.6e-32 143.3 568 25.4
CDE04G1094 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 3.3e-30 137.1 244 39.8
Zm00001eb299540 Zea mays HOM05D005605 ORTHO05D007615 2.8e-29 134.0 542 25.8
CDE04G2942 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 1.3e-26 125.2 186 44.6
CDE04G2564 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 3.5e-24 117.1 234 36.3
SalBow6G1488 Salvia bowleyana HOM05D002700 ORTHO05D003228 2.3e-23 114.4 247 34.8
Glyma.11G117751 Glycine max HOM05D005605 ORTHO05D007615 8.7e-23 112.5 71 74.6
HPP92_026667 Vanilla planifolia HOM05D005605 ORTHO05D007615 8.7e-23 112.5 147 46.3
Haze_02447 Corylus avellana HOM05D005605 ORTHO05D007615 3.3e-22 110.5 90 57.8
Haze_02443 Corylus avellana HOM05D005605 ORTHO05D007615 9.7e-22 109.0 101 53.5
MBI02_g24399_MAGBIO Magnolia biondii HOM05D005605 ORTHO05D007615 4.8e-21 106.7 103 51.5
SEGI_23691 Sequoiadendron giganteum HOM05D005605 ORTHO05D007615 3.1e-20 104.0 275 29.8
Dinv07689 Davidia involucrata HOM05D005605 ORTHO05D007615 1.1e-17 95.5 90 55.6
SEGI_40488 Sequoiadendron giganteum HOM05D005605 ORTHO05D007615 2.1e-16 91.3 148 37.8
HPP92_026666 Vanilla planifolia HOM05D005605 ORTHO05D007615 2.7e-16 90.9 207 34.3
AagrBONN_evm.TU.Sc2ySwM_228.1452 Anthoceros agrestis HOM05D005605 ORTHO05D007615 8.5e-10 69.3 175 29.1
Mapoly0073s0074 Marchantia polymorpha HOM05D005605 ORTHO05D007615 1.4e-09 68.6 151 29.1
Cfa004994 Carpinus fangiana HOM05D005605 ORTHO05D007615 2.7e-08 64.3 82 46.3
RcHm_v2.0_Chr2g0149071 Rosa chinensis HOM05D005956 ORTHO05D007197 2.3e-07 61.2 163 30.1
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 3.0e-07 60.8 163 30.1
Ciclev10013933m.g Citrus clementina HOM05D005956 ORTHO05D007197 6.7e-07 59.7 163 28.2
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 3.3e-06 57.4 157 29.9
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 5.7e-06 56.6 157 29.9
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 7.4e-06 56.2 135 30.4


User provided reference genes

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