Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 0.0e+00 1223.8 688 100.0
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 8.8e-301 1036.6 666 83.5
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.6e-230 803.1 660 70.6
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 3.2e-226 788.9 656 70.0
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 4.8e-222 775.0 669 66.2
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 1.2e-212 743.8 664 65.2
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 1.5e-212 743.4 667 64.6
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 4.5e-212 741.9 668 62.9
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 7.6e-212 741.1 669 65.0
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 1.7e-211 740.0 669 65.2
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 6.5e-211 738.0 661 66.6
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 6.0e-209 731.5 670 65.7
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 8.7e-208 727.6 666 65.3
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 9.7e-207 724.2 674 62.8
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 3.1e-205 719.2 666 63.7
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 1.5e-204 716.8 664 62.8
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 2.1e-201 706.4 665 63.3
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 6.7e-200 701.4 664 63.0
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 1.8e-197 693.3 666 59.9
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 2.4e-197 693.0 663 62.7
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 2.2e-195 686.4 720 58.1
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 2.9e-195 686.0 676 60.4
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 3.2e-194 682.6 658 62.8
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 1.2e-193 680.6 678 59.9
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 2.7e-193 679.5 678 59.9
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 2.0e-191 673.3 666 60.1
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 1.3e-190 670.6 674 59.9
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 6.3e-190 668.3 667 59.2
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 1.1e-189 667.5 670 61.2
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 7.0e-189 664.8 666 60.8
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 3.2e-186 656.0 684 56.0
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 4.7e-185 652.1 525 65.5
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 1.0e-184 651.0 663 54.6
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 1.4e-184 650.6 666 60.8
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 1.8e-184 650.2 665 60.2
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 2.3e-184 649.8 666 57.8
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 2.3e-184 649.8 666 58.3
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 1.1e-183 647.5 665 58.0
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 1.1e-183 647.5 677 58.6
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 1.5e-183 647.1 674 59.5
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 2.4e-181 639.8 677 58.6
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 2.4e-181 639.8 668 59.0
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 5.3e-181 638.6 668 58.1
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 7.0e-181 638.3 652 59.4
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 9.1e-181 637.9 668 57.8
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 2.6e-180 636.3 655 58.0
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 1.3e-179 634.0 669 59.2
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 1.3e-179 634.0 699 56.5
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 2.2e-179 633.3 665 57.1
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 3.8e-179 632.5 667 58.6
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 1.9e-178 630.2 692 56.1
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 4.2e-178 629.0 666 56.8
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 9.4e-178 627.9 681 56.1
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 1.6e-177 627.1 577 62.4
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 3.6e-177 625.9 700 55.0
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 6.1e-177 625.2 666 56.2
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 4.8e-174 615.5 675 54.4
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 6.3e-174 615.1 688 55.5
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 8.2e-174 614.8 574 65.2
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 3.1e-173 612.8 686 54.5
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 3.1e-173 612.8 679 54.1
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 1.6e-172 610.5 661 56.9
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 7.7e-172 608.2 682 56.9
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 7.7e-172 608.2 673 56.0
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 1.1e-170 604.4 666 56.6
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 1.8e-168 597.0 674 55.3
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 4.8e-166 589.0 513 63.9
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 5.4e-165 585.5 665 55.9
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 2.3e-163 580.1 579 62.7
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 5.0e-163 578.9 667 54.6
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 3.3e-162 576.2 646 54.8
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 3.3e-162 576.2 668 56.6
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 9.5e-162 574.7 669 54.6
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 9.5e-162 574.7 684 50.9
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 7.3e-154 548.5 591 56.7
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 1.6e-153 547.4 591 57.5
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 2.8e-153 546.6 591 57.7
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 5.4e-149 532.3 665 50.2
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 9.2e-149 531.6 661 50.2
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 3.0e-147 526.6 664 51.8
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.8e-144 517.3 552 58.9
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 8.9e-144 515.0 676 51.5
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 8.3e-142 508.4 642 49.4
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 2.4e-141 506.9 666 46.8
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 2.5e-138 496.9 512 53.9
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 4.3e-138 496.1 700 48.0
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 3.6e-137 493.0 691 47.3
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 1.1e-136 491.5 509 54.0
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 1.4e-133 481.1 511 54.0
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 3.5e-132 476.5 505 52.3
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 7.8e-132 475.3 507 53.5
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 1.9e-130 470.7 596 53.2
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 2.5e-130 470.3 507 51.9
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 4.7e-129 466.1 543 53.0
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 3.9e-123 446.4 498 51.2
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 3.9e-123 446.4 498 51.2
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 9.6e-122 441.8 499 51.5
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 5.6e-114 416.0 593 48.6
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.6e-108 397.9 421 53.9
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 4.3e-106 389.8 376 53.5
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 1.8e-99 367.9 358 57.0
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 7.6e-95 352.4 521 41.7
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 1.7e-94 351.3 617 42.8
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 6.7e-91 339.3 616 42.5
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 3.7e-73 280.4 291 54.0
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 4.2e-69 266.9 302 57.9
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 6.3e-57 226.5 226 52.7
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 1.4e-56 225.3 487 35.1
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 1.4e-48 198.7 337 46.3
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 5.6e-37 160.2 568 29.8
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 4.4e-34 150.6 452 30.1
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 4.0e-27 127.5 168 50.0
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 6.6e-22 110.2 189 58.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 5.6e-13 80.5 137 39.4
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 1.1e-11 76.3 50 68.0
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 4.9e-09 67.4 87 42.5
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 8.4e-09 66.6 88 39.8


User provided reference genes

Program Settings