Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0021500 Rhododendron simsii HOM05D003425 ORTHO05D003897 1.5e-181 639.4 323 100.0
Rhsim07G0021300 Rhododendron simsii HOM05D003425 ORTHO05D003897 1.2e-101 374.0 201 94.0
vmacro13340 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 1.4e-91 340.5 230 77.8
CSS0020037 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 1.5e-85 320.5 207 77.8
CSS0009417 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 1.7e-84 317.0 235 68.9
Rhsim06G0029700 Rhododendron simsii HOM05D003425 ORTHO05D003897 2.9e-81 306.2 237 66.7
Actinidia22523 Actinidia chinensis HOM05D003425 ORTHO05D003897 7.3e-80 301.6 232 67.7
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 7.3e-80 301.6 200 75.5
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 4.0e-78 295.8 200 72.0
GSVIVG01009755001 Vitis vinifera HOM05D003425 ORTHO05D003897 9.8e-77 291.2 200 71.5
Duzib093G1530 Durio zibethinus HOM05D003425 ORTHO05D003897 2.9e-76 289.7 203 71.4
MD15G1023500 Malus domestica HOM05D003425 ORTHO05D003897 1.2e-74 284.3 233 62.2
Solyc04g080670.3 Solanum lycopersicum HOM05D003425 ORTHO05D003897 1.6e-74 283.9 201 71.1
Sopen04g034260 Solanum pennellii HOM05D003425 ORTHO05D003897 2.7e-74 283.1 201 71.1
PGSC0003DMG400003698 Solanum tuberosum HOM05D003425 ORTHO05D003897 1.0e-73 281.2 201 70.1
Cfa013863 Carpinus fangiana HOM05D003425 ORTHO05D003897 3.0e-73 279.6 232 62.1
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 5.0e-73 278.9 233 61.4
MD08G1026900 Malus domestica HOM05D003425 ORTHO05D003897 2.5e-72 276.6 233 60.5
Hma1.2p1_0775F.1_g216480 Hydrangea macrophylla HOM05D003425 ORTHO05D003897 4.3e-72 275.8 199 69.8
TAR625G0421 Trochodendron aralioides HOM05D003425 ORTHO05D003897 4.3e-72 275.8 200 67.5
Peaxi162Scf00140g00065 Petunia axillaris HOM05D003425 ORTHO05D003897 5.6e-72 275.4 200 67.0
Gohir.A05G191900 Gossypium hirsutum HOM05D003425 ORTHO05D003897 7.3e-72 275.0 201 68.2
Gohir.D05G195200 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.6e-71 273.9 201 68.2
CAN.G710.1 Capsicum annuum HOM05D003425 ORTHO05D003897 4.7e-71 272.3 200 68.0
Prupe.1G549800 Prunus persica HOM05D003425 ORTHO05D003897 6.2e-71 271.9 233 62.7
Cc10_g02550 Coffea canephora HOM05D003425 ORTHO05D003897 1.1e-70 271.2 243 58.8
Nitab4.5_0003682g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 1.1e-70 271.2 200 67.0
Prupe.1G375600 Prunus persica HOM05D003425 ORTHO05D003897 1.1e-70 271.2 233 60.5
Gorai.009G200000 Gossypium raimondii HOM05D003425 ORTHO05D003897 1.8e-70 270.4 201 67.7
RcHm_v2.0_Chr6g0301531 Rosa chinensis HOM05D003425 ORTHO05D003897 2.3e-70 270.0 243 58.8
Thecc.08G031800 Theobroma cacao HOM05D003425 ORTHO05D003897 2.3e-70 270.0 203 66.0
Peaxi162Scf00028g00119 Petunia axillaris HOM05D003425 ORTHO05D003897 4.0e-70 269.2 200 65.5
TWI56G1347 Tripterygium wilfordii HOM05D003425 ORTHO05D003897 4.0e-70 269.2 205 65.4
Nn5g29685 Nelumbo nucifera HOM05D003425 ORTHO05D003897 1.2e-69 267.7 204 66.7
Duzib041G0299 Durio zibethinus HOM05D003425 ORTHO05D003897 1.5e-69 267.3 203 66.0
Nitab4.5_0005911g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 2.0e-69 266.9 200 66.5
FvH4_2g39440 Fragaria vesca HOM05D003425 ORTHO05D003897 4.4e-69 265.8 233 57.5
Potri.005G230200 Populus trichocarpa HOM05D003425 ORTHO05D003897 4.4e-69 265.8 205 64.9
Lj2A96T68 Lonicera japonica HOM05D003425 ORTHO05D003897 7.5e-69 265.0 226 60.2
SalBow7G0662 Salvia bowleyana HOM05D003425 ORTHO05D003897 9.8e-69 264.6 200 63.5
Lj4A789T47 Lonicera japonica HOM05D003425 ORTHO05D003897 1.7e-68 263.8 200 65.5
PSO675G3885 Papaver somniferum HOM05D003425 ORTHO05D003897 3.7e-68 262.7 232 59.1
FAN20G1443 Fragaria x ananassa HOM05D003425 ORTHO05D003897 4.9e-68 262.3 233 57.1
FAN27G0002 Fragaria x ananassa HOM05D003425 ORTHO05D003897 4.9e-68 262.3 233 57.1
HanXRQChr05g0151701 Helianthus annuus HOM05D003425 ORTHO05D003897 6.4e-68 261.9 201 65.2
Manes.18G020000 Manihot esculenta HOM05D003425 ORTHO05D003897 6.4e-68 261.9 201 63.2
Cpa.g.sc104.107 Carica papaya HOM05D003425 ORTHO05D003897 8.3e-68 261.5 204 64.2
COL.COLO4_26258 Corchorus olitorius HOM05D003425 ORTHO05D003897 8.3e-68 261.5 203 64.0
Manes.05G156100 Manihot esculenta HOM05D003425 ORTHO05D003897 8.3e-68 261.5 205 61.5
Lalb_Chr22g0354631 Lupinus albus HOM05D003425 ORTHO05D003897 1.1e-67 261.2 201 64.7
Gohir.A06G008100 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.9e-67 260.4 203 65.0
Gohir.D06G003800 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.9e-67 260.4 203 65.0
Gorai.010G008400 Gossypium raimondii HOM05D003425 ORTHO05D003897 1.9e-67 260.4 203 65.0
QL02p009392 Quercus lobata HOM05D003425 ORTHO05D003897 1.9e-67 260.4 232 59.5
ECA246G1007 Erigeron canadensis HOM05D003425 ORTHO05D003897 1.2e-66 257.7 201 65.7
PSO541G3967 Papaver somniferum HOM05D003425 ORTHO05D003897 1.6e-66 257.3 232 58.6
Atru.chr13.426 Acer truncatum HOM05D003425 ORTHO05D003897 2.0e-66 256.9 204 62.3
Cpa.g.sc99.35 Carica papaya HOM05D003425 ORTHO05D003897 2.7e-66 256.5 201 60.7
CiPaw.07G158500 Carya illinoinensis HOM05D003425 ORTHO05D003897 3.5e-66 256.1 200 64.0
Potri.002G032900 Populus trichocarpa HOM05D003425 ORTHO05D003897 3.5e-66 256.1 205 63.9
ECA233G5099 Erigeron canadensis HOM05D003425 ORTHO05D003897 4.6e-66 255.8 200 63.0
Ca_18048_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 6.0e-66 255.4 201 63.7
Lj1g0002363 Lotus japonicus HOM05D003425 ORTHO05D003897 1.3e-65 254.2 199 63.8
Aqoxy6G01168 Aquilegia oxysepala HOM05D003425 ORTHO05D003897 1.7e-65 253.8 200 63.5
AUR62038045 Chenopodium quinoa HOM05D003425 ORTHO05D003897 2.3e-65 253.4 208 61.1
arahy.Tifrunner.gnm1.ann1.2UC4WV Arachis hypogaea HOM05D003425 ORTHO05D003897 5.0e-65 252.3 204 62.7
TPR.G14394 Trifolium pratense HOM05D003425 ORTHO05D003897 8.6e-65 251.5 201 62.2
arahy.Tifrunner.gnm1.ann1.2NS234 Arachis hypogaea HOM05D003425 ORTHO05D003897 1.1e-64 251.1 204 62.3
Medtr3g112130 Medicago truncatula HOM05D003425 ORTHO05D003897 1.1e-64 251.1 201 62.7
ClCG08G014810 Citrullus lanatus HOM05D003425 ORTHO05D003897 1.9e-64 250.4 201 63.7
CsaV3_2G028930 Cucumis sativus L. HOM05D003425 ORTHO05D003897 2.5e-64 250.0 201 63.2
Migut.C00755 Erythranthe guttata HOM05D003425 ORTHO05D003897 3.3e-64 249.6 204 60.8
MBI10_g00770_MAGBIO Magnolia biondii HOM05D003425 ORTHO05D003897 3.3e-64 249.6 204 61.3
SalBow2G1759 Salvia bowleyana HOM05D003425 ORTHO05D003897 3.3e-64 249.6 200 63.0
Sc26g0003500 Simmondsia chinensis HOM05D003425 ORTHO05D003897 3.3e-64 249.6 200 59.5
Glyma.04G030000 Glycine max HOM05D003425 ORTHO05D003897 5.6e-64 248.8 203 63.1
Glyma.06G030100 Glycine max HOM05D003425 ORTHO05D003897 5.6e-64 248.8 203 64.0
AUR62044165 Chenopodium quinoa HOM05D003425 ORTHO05D003897 7.3e-64 248.4 204 61.3
MELO3C010962.2 Cucumis melo HOM05D003425 ORTHO05D003897 7.3e-64 248.4 201 62.7
Medtr1g022475 Medicago truncatula HOM05D003425 ORTHO05D003897 7.3e-64 248.4 201 64.2
CANSAT80G1124 Cannabis sativa HOM05D003425 ORTHO05D003897 9.5e-64 248.1 202 58.9
Lsat_1_v5_gn_5_3401 Lactuca sativa HOM05D003425 ORTHO05D003897 9.5e-64 248.1 201 63.7
Lalb_Chr23g0266531 Lupinus albus HOM05D003425 ORTHO05D003897 9.5e-64 248.1 204 62.3
Ca_15494_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 1.2e-63 247.7 227 58.6
Phvul.001G012200 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 1.2e-63 247.7 233 57.1
arahy.Tifrunner.gnm1.ann1.P3QKDQ Arachis hypogaea HOM05D003425 ORTHO05D003897 4.7e-63 245.7 201 62.2
Glyma.14G072200 Glycine max HOM05D003425 ORTHO05D003897 4.7e-63 245.7 201 62.7
Psat5g016160 Pisum sativum HOM05D003425 ORTHO05D003897 6.2e-63 245.4 201 61.7
Psat6g009400 Pisum sativum HOM05D003425 ORTHO05D003897 6.2e-63 245.4 201 61.7
PGR031G1797 Punica granatum HOM05D003425 ORTHO05D003897 6.2e-63 245.4 231 56.7
Migut.C00703 Erythranthe guttata HOM05D003425 ORTHO05D003897 8.1e-63 245.0 204 59.8
THA.LOC104814145 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 1.1e-62 244.6 243 54.3
arahy.Tifrunner.gnm1.ann1.X2SRZK Arachis hypogaea HOM05D003425 ORTHO05D003897 1.4e-62 244.2 201 62.2
Ciclev10001170m.g Citrus clementina HOM05D003425 ORTHO05D003897 1.4e-62 244.2 230 56.5
Sed0012207 Sechium edule HOM05D003425 ORTHO05D003897 1.4e-62 244.2 201 61.7
SGA_v2.0_scaffold201G41381 Striga asiatica HOM05D003425 ORTHO05D003897 1.4e-62 244.2 200 60.5
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 1.4e-62 244.2 201 61.2
AUR62014493 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.8e-62 243.8 200 60.5
Phvul.009G060100 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 1.8e-62 243.8 201 61.7
VMungo1309G3095 Vigna mungo HOM05D003425 ORTHO05D003897 5.2e-62 242.3 200 61.5
Aa31LG7G6080 Aethionema arabicum HOM05D003425 ORTHO05D003897 6.8e-62 241.9 207 57.5
Eucgr.F01873 Eucalyptus grandis HOM05D003425 ORTHO05D003897 8.9e-62 241.5 205 59.5
Lsat_1_v5_gn_6_69620 Lactuca sativa HOM05D003425 ORTHO05D003897 3.4e-61 239.6 203 60.6
TPR.G12467 Trifolium pratense HOM05D003425 ORTHO05D003897 5.8e-61 238.8 200 62.5
CsaV3_3G045400 Cucumis sativus L. HOM05D003425 ORTHO05D003897 7.5e-61 238.4 229 56.3
Hund17177 Selenicereus undatus HOM05D003425 ORTHO05D003897 1.7e-60 237.3 200 60.0
MELO3C003802.2 Cucumis melo HOM05D003425 ORTHO05D003897 2.2e-60 236.9 229 55.9
ClCG05G018770 Citrullus lanatus HOM05D003425 ORTHO05D003897 2.9e-60 236.5 201 60.2
Lj5g0018838 Lotus japonicus HOM05D003425 ORTHO05D003897 2.9e-60 236.5 201 60.2
Carub.0008s0609 Capsella rubella HOM05D003425 ORTHO05D003897 6.4e-60 235.3 201 61.7
Sed0022647 Sechium edule HOM05D003425 ORTHO05D003897 6.4e-60 235.3 201 59.7
CARHR022450 Cardamine hirsuta HOM05D003425 ORTHO05D003897 1.1e-59 234.6 211 56.4
DCAR_009967 Daucus carota HOM05D003425 ORTHO05D003897 2.4e-59 233.4 202 61.9
QL02p009285 Quercus lobata HOM05D003425 ORTHO05D003897 2.4e-59 233.4 170 67.1
C09p25370 Brassica napus HOM05D003425 ORTHO05D003897 7.1e-59 231.9 231 55.4
QL07p047090 Quercus lobata HOM05D003425 ORTHO05D003897 7.1e-59 231.9 169 67.5
Thhalv10003206m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 9.2e-59 231.5 201 58.7
AL8G18220 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 1.2e-58 231.1 201 60.2
Sed0018986 Sechium edule HOM05D003425 ORTHO05D003897 1.2e-58 231.1 201 59.7
A09p20000 Brassica napus HOM05D003425 ORTHO05D003897 1.6e-58 230.7 231 55.4
BraA09t37609Z Brassica rapa HOM05D003425 ORTHO05D003897 1.6e-58 230.7 231 55.4
THA.LOC104813817 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 1.6e-58 230.7 201 57.2
AT5G42810 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 2.7e-58 229.9 201 60.7
Carub.0001s2165 Capsella rubella HOM05D003425 ORTHO05D003897 2.7e-58 229.9 207 56.0
Thhalv10007647m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 3.5e-58 229.6 207 54.1
Sp1g19600 Schrenkiella parvula HOM05D003425 ORTHO05D003897 7.8e-58 228.4 210 54.3
BcaB07g31042 Brassica carinata HOM05D003425 ORTHO05D003897 1.0e-57 228.0 230 55.2
Aa31LG9G12880 Aethionema arabicum HOM05D003425 ORTHO05D003897 2.3e-57 226.9 201 58.7
Sp2g07500 Schrenkiella parvula HOM05D003425 ORTHO05D003897 3.9e-57 226.1 230 54.3
BolC9t55437H Brassica oleracea HOM05D003425 ORTHO05D003897 8.6e-57 224.9 231 54.1
Oeu063611.1 Olea europaea HOM05D003425 ORTHO05D003897 8.6e-57 224.9 170 66.5
Ah.05g176930 Amaranthus hybridus HOM05D003425 ORTHO05D003897 1.5e-56 224.2 208 55.3
CARHR181460 Cardamine hirsuta HOM05D003425 ORTHO05D003897 1.5e-56 224.2 201 58.7
BcaC04g21968 Brassica carinata HOM05D003425 ORTHO05D003897 2.5e-56 223.4 230 53.5
AL1G35540 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 4.3e-56 222.6 206 55.3
AT1G22100 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.6e-55 220.7 206 53.9
DCAR_017527 Daucus carota HOM05D003425 ORTHO05D003897 1.6e-55 220.7 206 56.8
AL2G17640 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 3.6e-55 219.5 208 54.8
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 3.6e-55 219.5 204 52.0
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 3.6e-55 219.5 204 52.0
Os04g0661200 Oryza sativa ssp. japonica HOM05D003425 ORTHO05D003897 6.2e-55 218.8 200 55.0
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 8.1e-55 218.4 208 51.4
HanXRQChr08g0236251 Helianthus annuus HOM05D003425 ORTHO05D003897 1.1e-54 218.0 204 57.4
AT1G58643 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.4e-54 217.6 208 54.3
AT1G58936 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.4e-54 217.6 208 54.3
AT1G59312 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.4e-54 217.6 208 54.3
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.4e-54 217.6 204 52.0
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.8e-54 217.2 204 52.0
BolC8t49775H Brassica oleracea HOM05D003425 ORTHO05D003897 4.0e-54 216.1 204 51.5
Carub.0002s0599 Capsella rubella HOM05D003425 ORTHO05D003897 5.2e-54 215.7 209 52.6
Oeu030423.1 Olea europaea HOM05D003425 ORTHO05D003897 4.4e-53 212.6 168 64.9
Zm00001eb067500 Zea mays HOM05D003425 ORTHO05D003897 1.9e-51 207.2 200 53.5
Zm00001eb432760 Zea mays HOM05D003425 ORTHO05D003897 3.2e-51 206.5 204 52.5
CDE06G1246 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 1.9e-48 197.2 200 51.5
ATR0568G131 Amborella trichopoda HOM05D003425 ORTHO05D003897 4.3e-48 196.1 203 51.7
SHI08133 Sapria himalayana HOM05D003425 ORTHO05D003897 9.6e-48 194.9 231 50.2
PGSC0003DMG400015950 Solanum tuberosum HOM05D003425 ORTHO05D003897 3.6e-47 193.0 148 64.2
CDE02G1177 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 1.9e-43 180.6 210 48.1
EL10Ac1g00639 Beta vulgaris HOM05D003425 ORTHO05D003897 3.9e-41 172.9 170 53.5
SEGI_18330 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 2.5e-40 170.2 214 43.9
SEGI_21240 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 3.3e-40 169.9 214 43.9
Lsat_1_v5_gn_0_45760 Lactuca sativa HOM05D003425 ORTHO05D003897 2.8e-39 166.8 131 65.6
Rhsim05G0103100 Rhododendron simsii HOM05D003425 ORTHO05D003897 1.8e-38 164.1 225 46.7
arahy.Tifrunner.gnm1.ann1.PN9ZPA Arachis hypogaea HOM05D008068 ORTHO05D003897 3.0e-33 146.7 123 60.2
AagrBONN_evm.TU.Sc2ySwM_362.197 Anthoceros agrestis HOM05D003425 ORTHO05D003897 4.9e-28 129.4 202 37.6
SMO200G0117 Selaginella moellendorffii HOM05D003425 ORTHO05D003897 1.4e-27 127.9 216 38.0
Rhsim02G0167500 Rhododendron simsii HOM05D000002 ORTHO05D000047 5.5e-27 125.9 80 78.8
Cc00_g02970 Coffea canephora HOM05D003425 ORTHO05D003897 7.9e-26 122.1 201 38.8
AUR62019450 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.3e-25 121.3 92 64.1
Pp3c1_36100 Physcomitrium patens HOM05D003425 ORTHO05D003897 8.2e-23 112.1 235 35.3
Pp3c14_17850 Physcomitrium patens HOM05D003425 ORTHO05D003897 3.1e-22 110.2 209 35.9
CBR_g22893 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-20 102.4 228 33.3
SEGI_34796 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 9.3e-19 98.6 108 46.3
Mapoly0027s0188 Marchantia polymorpha HOM05D003425 ORTHO05D003897 1.0e-17 95.1 233 31.3
Mapoly0027s0125 Marchantia polymorpha HOM05D003425 ORTHO05D003897 1.3e-17 94.7 202 33.2
Sc26g0003780 Simmondsia chinensis HOM05D003425 ORTHO05D003897 1.1e-16 91.7 104 46.2
TAR628G1429 Trochodendron aralioides HOM05D003425 ORTHO05D003897 3.3e-16 90.1 75 66.7
TAR628G0427 Trochodendron aralioides HOM05D003425 ORTHO05D003897 7.4e-16 89.0 83 57.8
Sc26g0003700 Simmondsia chinensis HOM05D003425 ORTHO05D003897 2.2e-15 87.4 104 44.2
Rhsim05G0129700 Rhododendron simsii HOM05D003425 ORTHO05D003897 3.7e-15 86.7 193 34.2
C07p21730 Brassica napus HOM05D003425 ORTHO05D003897 8.8e-09 65.5 68 54.4
BolC7t42703H Brassica oleracea HOM05D003425 ORTHO05D003897 8.8e-09 65.5 68 54.4


User provided reference genes

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