Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 3.3e-289 997.7 505 100.0
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.4e-210 736.5 505 78.4
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.4e-210 736.5 505 78.4
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 6.4e-208 727.6 503 77.5
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 1.1e-207 726.9 506 76.7
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 1.0e-205 720.3 505 75.8
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 6.9e-202 707.6 509 73.1
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 1.2e-201 706.8 507 74.8
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 8.4e-200 700.7 504 73.8
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 1.4e-199 699.9 512 72.3
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 2.1e-198 696.0 510 72.5
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 2.7e-198 695.7 493 75.3
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 4.6e-198 694.9 507 73.0
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 1.3e-197 693.3 499 73.5
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 1.7e-197 693.0 499 73.1
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 3.0e-197 692.2 505 72.3
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 3.9e-197 691.8 499 73.9
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 6.6e-197 691.0 506 71.7
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 6.6e-197 691.0 503 73.2
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 1.9e-196 689.5 497 73.4
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.9e-196 689.5 541 71.2
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 2.5e-196 689.1 505 72.9
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 7.4e-196 687.6 523 70.7
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 1.6e-195 686.4 505 72.3
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 3.6e-195 685.3 515 71.1
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 3.6e-195 685.3 505 72.3
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 4.8e-195 684.9 505 72.3
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 1.1e-194 683.7 506 70.9
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 1.1e-194 683.7 507 71.6
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.1e-194 683.7 547 69.3
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 1.4e-194 683.3 503 71.2
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 1.8e-194 682.9 504 72.0
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 2.4e-194 682.6 519 70.1
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 4.0e-194 681.8 505 71.5
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 6.9e-194 681.0 505 71.5
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 9.0e-194 680.6 504 71.2
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 2.0e-193 679.5 508 71.1
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 2.0e-193 679.5 515 70.9
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 2.0e-193 679.5 507 70.4
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 3.4e-193 678.7 505 71.9
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 7.6e-193 677.6 509 72.1
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 9.9e-193 677.2 503 72.2
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 2.2e-192 676.0 511 72.4
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 2.2e-192 676.0 499 71.9
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 2.2e-192 676.0 515 70.3
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 3.8e-192 675.2 505 71.5
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 6.4e-192 674.5 511 72.2
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 6.4e-192 674.5 505 71.3
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 6.4e-192 674.5 596 63.9
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 8.4e-192 674.1 515 70.1
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 1.1e-191 673.7 506 70.9
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 1.4e-191 673.3 493 72.6
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 1.4e-191 673.3 503 71.6
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 4.2e-191 671.8 508 71.5
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 5.5e-191 671.4 497 72.4
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 5.5e-191 671.4 515 69.5
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 9.3e-191 670.6 503 70.8
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.6e-190 669.8 508 71.5
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.6e-190 669.8 508 71.5
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 4.6e-190 668.3 515 69.1
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 7.9e-190 667.5 505 70.5
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.3e-189 666.8 508 71.1
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.3e-189 666.0 506 71.5
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 3.9e-189 665.2 509 69.7
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 6.7e-189 664.5 509 69.7
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 8.7e-189 664.1 507 70.8
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 8.7e-189 664.1 506 70.9
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 8.7e-189 664.1 493 71.6
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 1.5e-188 663.3 506 70.6
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 1.9e-188 662.9 505 69.3
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 3.3e-188 662.1 506 70.4
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 7.4e-188 661.0 528 68.0
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 1.3e-187 660.2 511 70.8
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 1.6e-187 659.8 506 69.2
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 3.7e-187 658.7 528 67.8
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 3.7e-187 658.7 505 69.7
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 1.1e-186 657.1 495 71.1
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 6.9e-186 654.4 511 69.1
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 9.0e-186 654.1 482 72.6
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 1.2e-185 653.7 503 69.8
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 2.0e-185 652.9 511 69.3
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 4.5e-185 651.7 500 70.0
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 5.8e-185 651.4 511 69.1
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 1.3e-184 650.2 511 70.5
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 1.7e-184 649.8 495 69.9
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 6.5e-184 647.9 491 72.1
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 5.5e-183 644.8 505 68.7
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 1.6e-182 643.3 507 69.0
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 3.0e-181 639.0 505 67.9
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 1.5e-180 636.7 507 67.9
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 1.9e-180 636.3 505 67.7
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 4.3e-180 635.2 505 67.5
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 5.7e-180 634.8 503 67.2
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 9.6e-180 634.0 505 67.5
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 1.6e-179 633.3 504 69.0
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 3.7e-179 632.1 502 66.9
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 4.8e-179 631.7 503 67.2
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 1.1e-178 630.6 497 68.2
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 1.8e-178 629.8 502 66.7
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 1.8e-178 629.8 497 67.8
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 2.4e-178 629.4 502 66.9
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 3.1e-178 629.0 502 67.1
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 4.1e-178 628.6 505 66.7
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 9.0e-178 627.5 499 66.3
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 3.4e-177 625.5 505 66.7
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 5.9e-177 624.8 502 65.9
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 5.9e-177 624.8 502 65.9
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 3.8e-176 622.1 502 65.9
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 1.9e-175 619.8 501 67.7
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 2.7e-174 615.9 491 68.4
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 6.1e-174 614.8 503 65.4
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 3.0e-173 612.5 510 65.3
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 2.5e-172 609.4 487 66.3
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 3.3e-172 609.0 503 65.0
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 2.8e-171 605.9 503 64.8
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 1.4e-170 603.6 503 64.6
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.4e-169 599.0 437 74.1
MD01G1050400 Malus domestica HOM05D003871 ORTHO05D004621 2.9e-168 595.9 539 61.4
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 4.2e-167 592.0 506 63.0
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 5.5e-167 591.7 503 64.2
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 5.5e-167 591.7 512 63.5
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 9.4e-167 590.9 503 63.2
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 8.8e-165 584.3 495 62.0
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 2.0e-164 583.2 505 61.0
Sabra14G0056300 Salix brachista HOM05D003871 ORTHO05D004621 5.7e-164 581.6 524 62.6
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 1.1e-162 577.4 480 65.0
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 5.3e-162 575.1 456 67.8
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 2.0e-161 573.2 501 61.9
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 1.7e-160 570.1 468 65.0
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 5.5e-159 565.1 505 63.4
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 1.6e-158 563.5 464 64.9
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.8e-157 560.1 505 64.0
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 1.1e-151 540.8 465 61.3
SHI13479 Sapria himalayana HOM05D003871 ORTHO05D004621 3.6e-150 535.8 501 58.5
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 8.2e-147 524.6 438 65.1
Actinidia38296 Actinidia chinensis HOM05D003871 ORTHO05D004621 3.1e-146 522.7 360 77.2
AagrBONN_evm.TU.Sc2ySwM_362.2141 Anthoceros agrestis HOM05D003871 ORTHO05D004621 8.5e-144 514.6 421 64.6
Cpa.g.sc18.218 Carica papaya HOM05D003871 ORTHO05D004621 4.2e-143 512.3 365 74.5
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 1.3e-139 500.7 445 61.6
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 1.2e-137 494.2 393 67.2
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 4.0e-133 479.2 504 54.6
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.8e-125 453.8 475 56.8
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 6.2e-118 428.7 318 69.8
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 9.8e-116 421.4 315 70.2
Cre05.g234300 Chlamydomonas reinhardtii HOM05D003871 ORTHO05D004621 1.1e-109 401.4 474 47.5
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 1.5e-103 380.9 327 61.8
SEGI_15431 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 4.3e-103 379.4 372 57.8
PRCOL_00001778 Prasinoderma coloniale HOM05D003871 ORTHO05D004621 2.4e-98 363.6 458 45.2
MCO11G248 Micromonas commoda HOM05D003871 ORTHO05D004621 3.5e-97 359.8 466 44.2
Carub.0003s3282 Capsella rubella HOM05D003871 ORTHO05D004621 6.2e-78 295.8 334 51.8
Haze_27079 Corylus avellana HOM05D003871 ORTHO05D004621 8.4e-75 285.4 510 38.2
CARHR257760 Cardamine hirsuta HOM05D003871 ORTHO05D004621 5.3e-69 266.2 303 52.1
Peaxi162Scf00233g00516 Petunia axillaris HOM05D003871 ORTHO05D004621 1.6e-65 254.6 300 50.3
RcHm_v2.0_Chr1g0352651 Rosa chinensis HOM05D003871 ORTHO05D004621 5.9e-60 236.1 138 84.8
EL10Ac1g00724 Beta vulgaris HOM05D003871 ORTHO05D004621 2.0e-52 211.1 174 66.1
Medtr6g025300 Medicago truncatula HOM05D003871 ORTHO05D004621 5.1e-48 196.4 462 31.8
AL8G39820 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 2.0e-47 194.5 417 31.7
Cfa025745 Carpinus fangiana HOM05D003871 ORTHO05D004621 5.7e-47 193.0 492 29.9
Oeu038681.1 Olea europaea HOM05D003871 ORTHO05D004621 1.6e-41 174.9 98 85.7
Zm00001eb403970 Zea mays HOM05D003871 ORTHO05D004621 1.6e-41 174.9 162 58.6
CBR_g34614 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-40 171.8 123 69.1
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 3.3e-39 167.2 151 60.3
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.4e-39 166.0 151 59.6
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 9.7e-39 165.6 419 31.0
Hma1.2p1_0775F.1_g216560 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 1.1e-37 162.2 98 80.6
ClCG06G000070 Citrullus lanatus HOM05D002904 ORTHO05D003206 2.9e-35 154.1 303 36.0
TAR375G0392 Trochodendron aralioides HOM05D003871 ORTHO05D004621 2.7e-33 147.5 86 86.0
arahy.Tifrunner.gnm1.ann1.GU6ASX Arachis hypogaea HOM05D003871 ORTHO05D004621 8.0e-33 146.0 93 74.2
Lsat_1_v5_gn_9_24280 Lactuca sativa HOM05D003871 ORTHO05D004621 5.2e-32 143.3 136 58.1
BcaC01g03725 Brassica carinata HOM05D003871 ORTHO05D004621 6.7e-32 142.9 421 29.9
Lsat_1_v5_gn_8_32720 Lactuca sativa HOM05D003110 ORTHO05D003585 3.3e-31 140.6 112 66.1
BraA07t30175Z Brassica rapa HOM05D003871 ORTHO05D004621 6.3e-30 136.3 82 80.5
Actinidia38295 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.4e-29 135.2 96 75.0
HPP92_007379 Vanilla planifolia HOM05D003871 ORTHO05D004621 2.7e-28 131.0 81 79.0
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 1.3e-27 128.6 263 32.3
BcaB02g11168 Brassica carinata HOM05D003871 ORTHO05D004621 1.2e-20 105.5 101 52.5
BcaB04g17067 Brassica carinata HOM05D003871 ORTHO05D004621 2.7e-20 104.4 101 51.5
BcaC01g03724 Brassica carinata HOM05D003871 ORTHO05D039068 1.2e-15 89.0 97 46.4
BcaB08g34774 Brassica carinata HOM05D000054 ORTHO05D000286 1.3e-14 85.5 97 48.5
C03p23120 Brassica napus HOM05D003871 ORTHO05D032550 1.7e-14 85.1 152 35.5
arahy.Tifrunner.gnm1.ann1.F39Z70 Arachis hypogaea HOM05D008215 ORTHO05D004366 7.0e-13 79.7 56 67.9
ATR0757G136 Amborella trichopoda HOM05D003871 ORTHO05D004621 4.3e-10 70.5 77 53.2
AT3G12850 Arabidopsis thaliana HOM05D061468 ORTHO05D038599 2.0e-07 61.6 137 32.1
Haze_26412 Corylus avellana HOM05D003221 ORTHO05D004432 2.2e-06 58.2 112 30.4
Lj5g0008363 Lotus japonicus HOM05D003871 ORTHO05D236905 2.2e-06 58.2 51 60.8
BolC3t14713H Brassica oleracea HOM05D000059 ORTHO05D032550 2.9e-06 57.8 49 59.2


User provided reference genes

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