Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.8e-179 632.5 319 100.0
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.2e-162 576.6 318 91.5
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 4.2e-157 558.1 315 87.6
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 6.1e-148 527.7 324 80.9
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.8e-147 526.2 324 80.6
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.0e-142 510.4 315 80.6
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.6e-140 503.1 320 78.1
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.4e-138 495.0 319 76.5
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 4.4e-138 495.0 311 78.1
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 5.8e-138 494.6 315 77.5
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 2.9e-137 492.3 311 78.1
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 4.9e-137 491.5 311 76.2
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 4.9e-137 491.5 319 76.5
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 4.9e-137 491.5 316 78.2
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.4e-137 491.1 311 77.5
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.3e-137 490.7 311 77.2
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 8.3e-137 490.7 311 77.8
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 1.1e-136 490.3 318 75.8
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.1e-136 490.3 319 76.2
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.4e-136 490.0 319 76.2
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.9e-136 489.6 319 75.5
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.2e-136 488.8 311 77.2
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.2e-136 488.8 311 78.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.1e-136 488.4 311 77.2
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.6e-135 486.5 316 77.8
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.6e-135 486.5 322 76.1
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 3.5e-135 485.3 354 70.6
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 4.6e-135 485.0 316 77.5
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 6.0e-135 484.6 316 75.3
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 7.8e-135 484.2 319 76.5
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 7.8e-135 484.2 318 75.8
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.3e-134 483.4 324 74.1
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 2.3e-134 482.6 318 76.1
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 8.6e-134 480.7 312 77.9
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.9e-133 479.6 313 76.0
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.3e-133 478.8 316 77.2
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 4.3e-133 478.4 317 76.0
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 5.6e-133 478.0 314 75.5
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 7.3e-133 477.6 317 75.4
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 7.3e-133 477.6 316 73.7
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.6e-132 476.5 312 77.6
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 2.1e-132 476.1 318 73.6
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.1e-131 473.8 319 75.2
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.2e-130 470.3 318 72.0
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 1.2e-130 470.3 319 72.1
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 3.4e-130 468.8 319 72.1
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 5.8e-130 468.0 313 71.6
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 7.6e-130 467.6 373 64.3
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 7.6e-130 467.6 319 70.5
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.7e-129 466.5 314 73.9
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.4e-128 463.4 315 70.5
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.9e-128 463.0 319 71.2
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 3.2e-128 462.2 312 71.8
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 5.4e-128 461.5 318 73.0
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 7.1e-128 461.1 311 71.7
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 7.1e-128 461.1 317 73.8
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 7.1e-128 461.1 312 71.8
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 1.6e-127 459.9 326 70.2
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 4.6e-127 458.4 315 70.2
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 1.3e-126 456.8 314 69.7
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.7e-126 456.4 320 70.9
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 3.9e-126 455.3 323 69.3
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.1e-125 453.8 314 70.7
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.5e-125 453.4 323 69.3
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 2.5e-125 452.6 318 70.1
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.3e-125 451.8 318 71.7
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.2e-124 450.3 318 72.6
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.6e-124 449.9 313 70.0
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 3.6e-124 448.7 311 72.0
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 6.2e-124 448.0 314 70.4
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.4e-123 446.8 310 70.0
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 2.6e-122 442.6 340 66.8
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.4e-122 442.2 311 68.5
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 9.9e-122 440.7 315 70.8
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 2.2e-121 439.5 309 70.6
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 8.4e-121 437.6 315 69.5
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 3.2e-120 435.6 315 67.6
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 4.2e-120 435.3 314 67.5
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 5.4e-120 434.9 320 70.3
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 7.1e-120 434.5 315 68.3
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 9.3e-120 434.1 276 76.1
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.6e-119 433.3 311 69.5
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.7e-119 432.6 340 66.8
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 2.3e-118 429.5 319 69.0
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.0e-118 429.1 298 72.5
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 5.1e-118 428.3 319 68.7
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 5.1e-118 428.3 319 69.0
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 5.1e-118 428.3 319 68.7
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.9e-117 426.4 318 66.7
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 4.3e-117 425.2 313 67.7
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.3e-116 423.7 311 67.2
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.4e-115 419.5 331 66.5
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.2e-114 417.2 294 69.4
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 2.6e-114 416.0 311 65.6
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 8.4e-113 411.0 277 72.6
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.2e-112 409.1 260 77.7
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 3.2e-112 409.1 313 66.5
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 5.6e-109 398.3 268 72.0
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 3.4e-106 389.0 246 78.5
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 2.4e-104 382.9 241 80.5
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 4.0e-99 365.5 230 80.4
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.1e-96 357.5 310 58.1
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 6.0e-95 351.7 239 72.4
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.3e-94 349.7 203 84.7
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 4.3e-93 345.5 229 72.5
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 7.4e-93 344.7 316 54.4
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 5.3e-91 338.6 238 73.5
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.6e-87 325.5 338 54.4
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.1e-85 320.9 229 68.6
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 8.2e-84 314.7 314 53.2
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-80 304.3 241 69.3
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 4.2e-80 302.4 238 68.1
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.0e-70 271.2 189 68.3
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.4e-70 270.8 297 48.5
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 9.1e-67 258.1 188 68.1
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 8.2e-60 235.0 183 67.2
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 5.7e-53 212.2 133 74.4
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.3e-52 211.1 313 42.2
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.4e-51 207.6 322 41.9
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 5.4e-43 179.1 117 77.8
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 2.9e-41 173.3 319 38.9
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 2.0e-37 160.6 125 64.8
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 3.4e-37 159.8 107 76.6
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 6.4e-36 155.6 110 68.2
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 6.4e-36 155.6 110 68.2
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 6.4e-36 155.6 110 68.2
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.4e-35 153.7 125 60.8
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-34 149.1 111 68.5
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 3.2e-27 126.7 81 79.0
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 4.1e-27 126.3 102 59.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.6e-26 124.4 90 64.4
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 5.6e-24 115.9 81 76.5
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 8.9e-22 108.6 72 66.7
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 7.3e-16 89.0 81 54.3
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 2.8e-15 87.0 57 70.2
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 2.8e-15 87.0 57 70.2
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 8.1e-15 85.5 53 73.6
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 7.6e-13 79.0 57 57.9
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 1.6e-07 61.2 43 65.1
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 5.2e-06 56.2 41 73.2


User provided reference genes

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