Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 1.3e-38 162.5 82 100.0
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 7.6e-26 120.2 82 76.8
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 2.1e-23 112.1 59 91.5
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 2.7e-23 111.7 82 70.7
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 2.7e-23 111.7 82 69.5
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 4.6e-23 110.9 82 69.5
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 4.6e-23 110.9 82 68.3
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 7.9e-23 110.2 78 71.8
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 1.0e-22 109.8 80 72.5
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.0e-22 109.8 82 73.2
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.0e-22 109.8 82 73.2
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.0e-22 109.8 82 73.2
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.0e-22 109.8 82 73.2
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 1.3e-22 109.4 80 75.0
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.8e-22 109.0 82 68.3
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 2.3e-22 108.6 82 73.2
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 6.7e-22 107.1 78 70.5
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.7e-22 107.1 81 71.6
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 8.7e-22 106.7 80 67.5
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 8.7e-22 106.7 59 89.8
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 1.1e-21 106.3 82 67.1
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 1.9e-21 105.5 78 67.9
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 2.5e-21 105.1 82 68.3
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 3.3e-21 104.8 82 69.5
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 4.3e-21 104.4 83 71.1
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 4.3e-21 104.4 71 70.4
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 4.3e-21 104.4 82 68.3
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 9.6e-21 103.2 82 64.6
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 1.3e-20 102.8 79 67.1
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 1.3e-20 102.8 76 72.4
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 1.6e-20 102.4 59 81.4
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 2.8e-20 101.7 79 67.1
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 6.2e-20 100.5 80 65.0
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 8.1e-20 100.1 80 63.8
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 8.1e-20 100.1 75 66.7
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 1.1e-19 99.8 69 69.6
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 2.4e-19 98.6 59 83.1
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 2.4e-19 98.6 59 83.1
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 4.0e-19 97.8 71 67.6
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 4.0e-19 97.8 71 67.6
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 4.0e-19 97.8 88 61.4
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 4.0e-19 97.8 82 63.4
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 4.0e-19 97.8 82 62.2
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 5.3e-19 97.4 59 79.7
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 6.9e-19 97.1 56 82.1
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 9.0e-19 96.7 82 61.0
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 9.0e-19 96.7 61 78.7
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.2e-18 96.3 82 63.4
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 1.5e-18 95.9 81 60.5
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 4.5e-18 94.4 82 61.0
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 4.5e-18 94.4 59 76.3
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 5.8e-18 94.0 80 66.2
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 1.0e-17 93.2 82 61.0
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 1.3e-17 92.8 59 78.0
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 1.3e-17 92.8 75 62.7
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.7e-17 92.4 82 62.2
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.9e-17 91.7 118 50.8
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 3.8e-17 91.3 83 56.6
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 3.8e-17 91.3 82 57.3
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 4.9e-17 90.9 83 56.6
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 8.4e-17 90.1 61 72.1
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.1e-16 89.7 71 63.4
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 1.9e-16 89.0 73 58.9
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 3.2e-16 88.2 61 73.8
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 3.2e-16 88.2 73 57.5
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.2e-16 87.8 112 52.7
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 7.1e-16 87.0 62 69.4
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 1.6e-15 85.9 59 71.2
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 1.6e-15 85.9 59 71.2
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 1.6e-15 85.9 61 72.1
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 1.6e-15 85.9 78 52.6
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 2.1e-15 85.5 59 71.2
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 2.1e-15 85.5 59 71.2
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 2.1e-15 85.5 82 56.1
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 3.5e-15 84.7 62 67.7
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 4.6e-15 84.3 82 57.3
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 1.0e-14 83.2 75 57.3
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 3.9e-14 81.3 45 91.1
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 5.1e-14 80.9 62 62.9
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 5.1e-14 80.9 63 57.1
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 5.1e-14 80.9 83 54.2
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 5.1e-14 80.9 72 55.6
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 3.3e-13 78.2 83 53.0
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 5.7e-13 77.4 69 53.6
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 5.7e-13 77.4 83 53.0
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 9.6e-13 76.6 39 89.7
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 9.6e-13 76.6 39 94.9
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 1.3e-12 76.3 78 55.1
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.2e-12 73.9 84 50.0
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-11 73.2 82 54.9
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.4e-11 72.8 50 66.0
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 5.3e-11 70.9 57 63.2
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.9e-11 70.5 40 85.0
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 4.5e-10 67.8 38 78.9


User provided reference genes

Program Settings