Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 2628.2 1321 100.0
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1870.5 1319 75.2
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1862.8 1317 75.2
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1822.8 1317 73.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1815.0 1317 73.0
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1766.1 1319 70.6
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1761.5 1316 70.4
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1756.9 1319 70.4
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1744.9 1316 70.2
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1740.3 1317 69.6
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1739.5 1318 69.6
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1739.2 1316 69.5
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1729.9 1368 70.1
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1724.9 1316 69.5
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1721.1 1321 68.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1720.7 1337 67.8
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1719.9 1316 68.9
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1719.5 1325 68.7
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1718.7 1326 68.8
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1718.4 1320 69.1
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1717.2 1320 68.7
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1716.8 1321 68.7
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1714.5 1316 69.1
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1713.4 1318 69.6
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1712.6 1316 69.1
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1712.6 1317 68.7
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1712.2 1317 68.6
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1708.7 1295 70.0
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1705.6 1319 68.2
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1701.4 1316 68.3
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1701.0 1316 68.6
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1700.3 1317 68.3
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1696.8 1316 69.1
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1694.9 1317 68.9
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1692.9 1275 70.2
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1689.5 1317 68.2
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1687.5 1318 67.1
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1686.4 1321 68.1
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1681.4 1317 67.4
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1678.3 1316 67.6
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1677.9 1332 67.6
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1677.1 1316 67.6
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1675.6 1318 67.5
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1675.6 1316 67.2
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1674.4 1331 67.5
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1673.7 1370 66.1
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1671.0 1318 66.8
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1670.6 1318 67.2
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1670.2 1321 67.1
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1667.9 1317 67.4
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1667.1 1317 67.0
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1664.8 1316 67.6
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1664.0 1319 66.6
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1661.4 1360 66.0
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1657.9 1318 66.2
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1655.6 1394 64.6
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1651.0 1320 66.7
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1650.6 1316 66.8
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1637.5 1316 66.4
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1635.5 1318 66.2
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1635.2 1321 66.2
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1632.5 1320 65.8
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1632.1 1279 68.0
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1631.7 1320 65.8
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1629.8 1316 66.5
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1620.1 1320 65.5
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1617.4 1321 65.7
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1616.3 1362 64.5
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1600.9 1344 65.9
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1595.5 1318 64.9
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1588.2 1407 62.7
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1581.2 1235 68.4
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1579.3 1315 64.0
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1570.1 1268 66.0
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1558.5 1317 63.6
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1553.1 1318 62.8
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1550.8 1318 62.9
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1536.2 1322 62.6
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1535.0 1316 62.7
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1531.9 1322 62.6
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1531.2 1316 63.4
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1530.0 1317 62.2
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1511.5 1323 61.8
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1510.0 1324 61.9
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1508.8 990 78.0
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1503.4 1335 60.7
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1493.0 1322 61.6
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1491.9 1322 61.5
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1465.7 895 82.9
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1460.3 891 82.9
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1458.7 1324 59.7
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1449.1 1316 58.9
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1438.3 1316 58.5
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1430.2 919 78.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1419.8 1338 59.3
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1392.1 1319 58.5
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1382.5 888 79.5
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1358.6 913 74.9
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1335.1 1307 57.3
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1162.1 734 80.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1144.8 1323 51.0
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1124.0 929 64.4
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1096.3 996 59.1
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 8.1e-303 1044.3 1334 44.6
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 2.5e-275 953.0 1315 43.2
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.2e-268 929.9 1330 42.3
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.9e-267 926.8 1720 37.7
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.5e-267 926.4 639 76.4
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.6e-256 889.8 578 80.1
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.4e-254 883.2 1332 40.8
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.5e-243 846.7 812 55.5
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 9.4e-243 844.7 677 66.0
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.4e-238 830.1 1570 35.0
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 6.1e-218 762.3 883 50.2
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 1.3e-204 718.0 591 64.1
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 5.4e-198 696.0 424 79.5
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.1e-195 688.3 482 75.5
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 2.1e-186 657.5 420 73.3
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.2e-154 551.2 734 42.4
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 2.1e-141 508.1 312 80.1
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 9.7e-131 472.6 394 67.8
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 4.1e-121 440.7 356 68.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.2e-107 396.0 595 42.5
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 7.0e-97 360.1 1054 29.4
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.3e-82 312.8 828 29.6
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 6.6e-79 300.4 438 45.2
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.1e-78 299.7 260 64.2
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 9.5e-78 296.6 313 52.4
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.1e-76 291.6 183 78.7
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 9.6e-70 270.0 200 76.0
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 6.2e-69 267.3 1531 21.7
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 6.4e-58 230.7 212 59.0
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.3e-50 206.5 642 31.2
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 2.5e-49 202.2 212 58.5
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 5.1e-47 194.5 212 55.7
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.6e-45 189.5 211 53.1
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.6e-40 172.9 384 37.0
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 6.7e-39 167.5 337 35.3
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 2.2e-34 152.5 139 58.3
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 5.5e-33 147.9 452 28.1
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 7.9e-32 144.1 272 35.3
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 2.3e-31 142.5 82 85.4
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.3e-31 142.5 285 35.8
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 7.4e-30 137.5 218 43.6
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.7e-29 136.3 836 22.1
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 3.7e-29 135.2 85 80.0
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 3.7e-29 135.2 91 68.1
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-27 130.2 138 55.1
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 7.7e-27 127.5 82 79.3
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.3e-26 126.7 161 47.8
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.8e-26 125.2 86 62.8
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 7.9e-24 117.5 65 87.7
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 3.0e-23 115.5 65 80.0
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 4.8e-21 108.2 74 67.6
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.2e-18 99.4 67 64.2
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.2e-18 99.4 61 82.0
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.1e-16 92.8 80 62.5
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 8.8e-15 87.4 95 52.6
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 2.8e-13 82.4 45 80.0
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 1.4e-12 80.1 59 67.8
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.4e-12 80.1 92 48.9
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.1e-12 78.6 43 83.7
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 7.0e-12 77.8 56 62.5
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 2.2e-10 72.8 49 67.3
Rhsim06G0128800 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.2e-10 72.8 42 83.3
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 9.4e-09 67.4 42 76.2
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 9.4e-09 67.4 34 79.4
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.6e-08 66.6 71 50.7
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.4e-07 63.5 41 68.3


User provided reference genes

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