Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 3.2e-256 887.9 439 100.0
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 8.0e-215 750.4 437 85.8
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 7.6e-189 664.1 444 74.8
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 1.0e-185 653.7 441 73.9
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 1.5e-168 596.7 411 72.7
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 1.9e-168 596.3 441 67.3
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 2.5e-168 595.9 441 66.9
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 2.2e-164 582.8 449 65.3
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 8.4e-164 580.9 442 64.5
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 1.1e-163 580.5 441 66.7
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 3.5e-162 575.5 441 65.1
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 3.0e-161 572.4 441 64.9
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 6.7e-161 571.2 434 66.1
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 4.3e-160 568.5 447 64.2
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 2.8e-159 565.8 442 64.3
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 6.2e-159 564.7 442 64.0
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 1.8e-158 563.1 442 64.5
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 5.3e-158 561.6 442 64.3
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 9.0e-158 560.8 443 64.8
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 1.2e-157 560.5 442 64.0
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 1.5e-157 560.1 435 64.8
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 2.6e-157 559.3 445 63.8
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 3.4e-157 558.9 442 63.1
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 4.5e-157 558.5 440 62.7
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 7.6e-157 557.8 449 61.9
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 1.7e-156 556.6 442 63.3
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 1.7e-156 556.6 441 63.7
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 1.9e-155 553.1 441 62.6
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 1.2e-154 550.4 443 63.9
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 1.6e-154 550.1 445 63.4
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 2.1e-154 549.7 431 62.2
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 6.1e-154 548.1 444 62.4
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 1.0e-153 547.4 442 60.9
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 3.0e-153 545.8 444 61.3
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 3.9e-153 545.4 441 63.5
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 7.4e-152 541.2 447 60.2
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 9.7e-152 540.8 448 60.7
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 1.3e-151 540.4 402 66.2
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 1.3e-151 540.4 442 60.9
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 2.8e-151 539.3 419 62.8
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 2.4e-150 536.2 388 67.5
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 5.3e-150 535.0 441 63.3
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 5.3e-150 535.0 442 61.5
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.5e-149 531.9 442 62.9
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 5.9e-149 531.6 434 61.5
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 7.7e-149 531.2 446 59.9
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 3.8e-148 528.9 455 60.9
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 5.0e-148 528.5 441 59.2
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 1.4e-147 526.9 367 69.2
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 3.2e-147 525.8 430 60.5
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 4.2e-147 525.4 367 68.9
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.2e-147 525.4 437 62.7
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 9.4e-147 524.2 437 60.0
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 4.6e-146 521.9 441 59.6
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 4.6e-146 521.9 405 62.2
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 7.9e-146 521.2 413 62.0
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 7.9e-146 521.2 433 59.6
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.4e-145 520.4 433 62.8
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 1.4e-145 520.4 432 60.4
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 3.3e-144 515.8 394 66.0
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 7.4e-144 514.6 385 65.5
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 7.4e-144 514.6 385 64.2
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 1.7e-143 513.5 441 57.6
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 3.7e-143 512.3 471 55.8
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 3.7e-143 512.3 442 59.3
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 1.1e-142 510.8 439 58.5
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 4.1e-142 508.8 447 56.8
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 4.1e-142 508.8 433 58.2
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 5.3e-142 508.4 360 66.4
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 1.2e-141 507.3 436 60.3
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 4.5e-141 505.4 472 56.4
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 1.7e-140 503.4 442 57.2
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 2.2e-140 503.1 385 63.6
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 2.9e-140 502.7 432 57.6
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 3.8e-140 502.3 432 58.1
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 1.1e-139 500.7 433 57.0
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 1.4e-139 500.4 432 57.4
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 1.6e-138 496.9 432 57.4
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 3.6e-138 495.7 431 58.0
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 7.9e-138 494.6 321 72.0
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 1.4e-137 493.8 430 57.0
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 8.8e-137 491.1 442 57.9
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 8.8e-137 491.1 527 49.5
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 2.8e-135 486.1 477 53.9
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 8.2e-135 484.6 448 54.7
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 1.8e-134 483.4 403 61.5
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 2.4e-134 483.0 436 56.9
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 3.8e-132 475.7 322 71.7
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 6.5e-132 474.9 438 55.5
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 1.6e-130 470.3 350 63.7
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 1.6e-130 470.3 389 61.2
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 3.2e-123 446.0 435 53.8
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 2.6e-120 436.4 395 53.9
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 7.0e-118 428.3 442 53.4
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 7.2e-115 418.3 356 60.7
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 3.1e-110 402.9 284 73.2
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 1.7e-95 354.0 364 46.2
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 3.0e-92 343.2 332 51.8
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 4.7e-90 335.9 254 63.4
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 3.2e-86 323.2 434 43.1
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 7.1e-86 322.0 341 46.6
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 3.5e-85 319.7 406 41.1
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 6.2e-82 308.9 332 47.3
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 6.2e-82 308.9 333 47.4
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 4.1e-78 296.2 238 63.4
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 8.1e-74 282.0 409 39.6
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 6.2e-58 229.2 369 32.8
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 5.8e-48 196.1 183 57.9
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 4.1e-41 173.3 129 61.2
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 3.4e-32 143.7 111 64.0
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 2.4e-25 120.9 128 50.8
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 1.2e-16 92.0 59 67.8
Nitab4.5_0015177g0020 Nicotiana tabacum HOM05D001772 ORTHO05D008903 7.2e-14 82.8 50 68.0
Zm00001eb098470 Zea mays HOM05D001772 ORTHO05D008903 9.4e-06 55.8 53 50.9


User provided reference genes

Program Settings