Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 0.0e+00 1088.9 608 100.0
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 7.8e-192 674.5 475 86.7
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 2.7e-184 649.4 495 78.8
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 3.1e-124 449.9 478 60.7
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.0e-119 434.9 477 63.9
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.8e-111 407.5 484 57.6
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 7.4e-110 402.1 482 60.8
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.4e-108 397.1 382 65.2
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 4.2e-105 386.3 474 55.7
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 9.7e-94 348.6 418 55.0
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 2.7e-91 340.5 425 53.9
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 3.5e-91 340.1 389 59.9
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 5.9e-91 339.3 412 53.2
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 2.9e-90 337.0 408 55.1
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.5e-89 334.7 420 51.2
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 1.9e-89 334.3 383 57.2
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 3.2e-89 333.6 412 54.9
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.2e-89 333.6 479 53.2
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 6.1e-88 329.3 458 51.3
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 6.1e-88 329.3 480 51.2
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 4.0e-87 326.6 481 51.8
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 7.5e-86 322.4 383 54.3
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 7.5e-86 322.4 520 47.3
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 1.4e-84 318.2 410 52.4
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 3.1e-84 317.0 303 67.0
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 9.1e-84 315.5 301 66.8
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.2e-83 315.1 382 57.6
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 1.7e-82 311.2 501 47.1
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 1.7e-82 311.2 401 52.6
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 2.3e-82 310.8 316 62.0
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 6.6e-82 309.3 489 48.1
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 6.6e-82 309.3 485 49.9
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 1.1e-81 308.5 416 49.3
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 1.1e-81 308.5 503 46.9
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.5e-81 308.1 400 48.2
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 3.3e-81 307.0 327 60.2
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 5.5e-81 306.2 343 58.3
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.2e-80 305.1 509 44.8
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.1e-80 304.3 353 53.5
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 3.6e-80 303.5 489 45.0
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 4.7e-80 303.1 344 59.6
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 6.1e-80 302.8 301 61.8
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 8.0e-80 302.4 487 48.7
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.0e-79 302.0 487 48.9
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 1.4e-79 301.6 519 46.6
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 5.2e-79 299.7 370 53.5
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 6.8e-79 299.3 424 47.4
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.2e-77 294.3 399 46.6
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 2.8e-77 293.9 502 44.6
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 2.8e-77 293.9 359 50.4
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.7e-77 293.5 484 47.5
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 4.9e-77 293.1 432 48.8
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 8.3e-77 292.4 307 61.9
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 5.4e-76 289.7 432 45.4
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 7.0e-76 289.3 354 50.8
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.0e-75 287.7 416 49.3
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.3e-74 285.0 395 52.2
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 2.3e-74 284.3 388 45.6
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.9e-74 283.9 387 51.9
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 6.6e-74 282.7 402 54.0
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.5e-73 281.6 423 48.7
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 2.5e-73 280.8 511 40.7
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 2.5e-73 280.8 180 77.8
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.3e-73 280.0 415 48.7
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 2.1e-72 277.7 467 49.0
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 3.6e-72 276.9 348 51.4
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 3.6e-72 276.9 335 55.5
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.8e-71 274.6 328 54.0
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 2.3e-71 274.2 495 47.7
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.1e-71 273.9 384 50.8
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 4.0e-71 273.5 503 43.7
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 4.0e-71 273.5 387 51.2
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.2e-70 271.9 422 43.8
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 2.6e-70 270.8 409 44.5
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 3.4e-70 270.4 383 51.2
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 6.4e-69 266.2 422 44.1
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.3e-66 257.7 496 46.0
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 8.6e-66 255.8 440 45.0
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 8.6e-66 255.8 326 50.3
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 1.1e-65 255.4 513 42.5
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.5e-65 254.2 413 44.8
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 2.1e-64 251.1 415 44.8
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.8e-63 248.1 273 56.0
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 6.8e-63 246.1 523 39.2
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.2e-62 245.4 369 55.6
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 8.3e-61 239.2 445 42.7
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.9e-60 238.0 446 40.8
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 4.1e-60 236.9 406 43.6
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 5.4e-60 236.5 419 43.7
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 5.4e-60 236.5 390 47.9
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 1.6e-59 235.0 533 39.4
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.6e-59 235.0 423 44.2
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 6.0e-59 233.0 411 41.6
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 1.7e-58 231.5 407 40.8
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 3.9e-58 230.3 315 50.2
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 8.6e-58 229.2 368 44.8
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 9.5e-57 225.7 413 40.7
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 9.5e-57 225.7 404 42.8
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.6e-56 224.9 395 43.0
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 8.1e-56 222.6 604 35.1
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 3.1e-55 220.7 329 45.9
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 3.1e-55 220.7 329 45.9
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 3.1e-55 220.7 314 51.0
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 5.2e-55 219.9 333 46.2
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 2.6e-54 217.6 322 47.5
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 3.4e-54 217.2 284 51.8
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 4.4e-54 216.9 455 42.0
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 1.2e-46 192.2 209 52.2
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.8e-43 179.5 325 39.7
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 3.3e-41 174.1 334 41.0
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 4.2e-36 157.1 113 65.5
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 4.2e-36 157.1 124 63.7
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 4.6e-35 153.7 150 52.0
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 4.6e-35 153.7 150 52.0
vmacro00844 Vaccinium macrocarpon HOM05D001094 ORTHO05D001050 3.9e-26 124.0 122 74.6
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 1.5e-25 122.1 112 55.4
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 2.4e-23 114.8 80 66.2
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 5.3e-23 113.6 252 43.3
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 9.9e-22 109.4 137 38.7
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 7.1e-20 103.2 142 38.0
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 2.1e-19 101.7 63 84.1
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 6.0e-19 100.1 125 37.6
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.3e-18 99.0 71 73.2
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 2.3e-18 98.2 63 76.2
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 8.7e-18 96.3 64 73.4
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 3.7e-16 90.9 299 37.8
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 6.2e-16 90.1 56 82.1
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-15 89.4 61 73.8
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 1.4e-15 89.0 62 69.4
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 1.1e-09 69.3 102 51.0
AagrBONN_evm.TU.Sc2ySwM_117.3603 Anthoceros agrestis HOM05D002505 ORTHO05D006559 2.0e-06 58.5 78 30.8
Zm00001eb041580 Zea mays HOM05D042183 ORTHO05D001571 4.5e-06 57.4 47 57.4


User provided reference genes

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