Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 0.0e+00 1526.9 797 100.0
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 0.0e+00 1112.4 748 80.7
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 4.5e-264 914.8 745 67.4
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 3.1e-249 865.5 787 62.1
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 5.3e-249 864.8 744 64.5
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 2.0e-243 846.3 745 62.1
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 2.6e-224 782.7 728 60.3
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 5.4e-201 705.3 694 58.8
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 8.9e-196 688.0 750 55.3
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 5.2e-180 635.6 747 51.0
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 3.8e-170 602.8 738 50.0
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 4.9e-170 602.4 771 49.3
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 2.1e-168 597.0 755 49.9
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 2.3e-167 593.6 755 49.0
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 2.1e-157 560.5 874 42.2
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 1.2e-152 544.7 745 46.4
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 2.7e-152 543.5 758 47.8
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 3.5e-152 543.1 747 46.2
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 6.7e-151 538.9 754 46.6
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 2.5e-150 537.0 745 47.2
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 6.9e-148 528.9 761 47.7
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 4.5e-147 526.2 909 39.3
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 7.6e-147 525.4 759 46.2
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.2e-144 518.1 748 46.5
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 1.6e-144 517.7 756 46.4
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 3.5e-144 516.5 745 44.6
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 4.8e-141 506.1 745 44.4
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 6.9e-140 502.3 760 44.2
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 2.9e-138 496.9 753 44.0
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 1.4e-137 494.6 771 43.7
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 1.6e-136 491.1 740 43.0
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 3.0e-135 486.9 756 42.2
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 5.1e-135 486.1 756 42.5
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 5.1e-135 486.1 751 43.8
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 6.7e-135 485.7 759 42.8
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 6.7e-135 485.7 747 44.7
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.5e-134 483.8 751 43.8
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 1.3e-133 481.5 752 44.1
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 6.3e-133 479.2 752 43.9
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 6.9e-132 475.7 750 43.5
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 2.0e-131 474.2 746 43.2
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 3.8e-130 469.9 769 43.0
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 8.5e-130 468.8 768 40.8
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.1e-129 468.4 748 43.3
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 3.2e-129 466.8 806 41.6
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 1.6e-128 464.5 748 41.8
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 3.9e-127 459.9 756 42.2
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 2.5e-126 457.2 788 41.1
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 3.3e-126 456.8 757 40.7
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 3.7e-125 453.4 758 40.4
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 1.8e-124 451.1 769 42.1
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 1.8e-124 451.1 734 41.6
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 1.9e-121 441.0 751 41.3
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 3.9e-119 433.3 758 40.6
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 3.3e-118 430.3 781 41.1
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 2.4e-116 424.1 771 41.0
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 2.4e-116 424.1 746 39.8
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 3.5e-115 420.2 771 40.5
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 1.1e-113 415.2 757 40.8
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 4.2e-113 413.3 762 39.4
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.0e-111 407.1 759 40.1
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 4.0e-111 406.8 756 40.3
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 6.7e-111 406.0 759 40.3
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 2.0e-110 404.4 763 39.4
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 5.7e-110 402.9 763 39.3
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 6.3e-109 399.4 760 41.4
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 6.3e-109 399.4 759 39.4
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.1e-108 397.1 752 39.8
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 5.3e-108 396.4 771 39.7
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 6.1e-104 382.9 749 37.0
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 1.4e-103 381.7 749 36.8
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.0e-95 355.5 745 36.4
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 4.1e-92 343.6 753 36.7
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 9.2e-92 342.4 751 37.0
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 2.7e-91 340.9 770 37.5
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 2.3e-90 337.8 759 36.9
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 2.1e-88 331.3 741 37.2
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 7.5e-86 322.8 781 34.4
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 3.7e-85 320.5 777 37.1
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 1.4e-84 318.5 810 36.5
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 7.0e-84 316.2 757 36.6
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 4.6e-83 313.5 737 35.5
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 1.3e-82 312.0 755 36.7
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 3.0e-82 310.8 776 36.5
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 8.6e-82 309.3 773 36.2
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 2.5e-81 307.8 818 35.6
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 2.8e-80 304.3 751 33.8
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 4.7e-80 303.5 707 34.4
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.8e-79 301.6 739 34.1
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 2.3e-79 301.2 756 33.9
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 5.8e-78 296.6 803 35.0
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.7e-77 295.0 697 34.3
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 5.4e-76 290.0 707 34.4
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 9.2e-76 289.3 710 34.6
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 2.0e-75 288.1 669 35.3
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.0e-74 285.8 726 36.0
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 6.6e-74 283.1 773 30.8
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 2.5e-73 281.2 705 33.3
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 1.4e-71 275.4 751 32.9
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 2.6e-70 271.2 302 55.6
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 1.1e-68 265.8 775 33.9
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.4e-68 265.4 771 32.2
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 2.3e-66 258.1 785 33.8
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 6.6e-66 256.5 763 30.0
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 1.1e-65 255.8 778 33.5
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 4.3e-65 253.8 752 33.4
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 6.2e-64 250.0 783 33.5
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 5.2e-63 246.9 787 32.4
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 1.3e-61 242.3 745 31.8
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 1.7e-61 241.9 786 32.1
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 2.1e-59 235.0 719 30.9
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 1.3e-53 215.7 775 31.7
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 2.2e-53 214.9 775 31.7
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 8.4e-53 213.0 763 31.6
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 2.4e-52 211.5 159 68.6
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 4.2e-52 210.7 679 31.1
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 9.3e-52 209.5 795 31.2
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 1.2e-51 209.1 797 30.5
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 1.2e-51 209.1 762 31.1
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 1.2e-51 209.1 797 30.5
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 1.3e-50 205.7 771 31.0
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 1.7e-50 205.3 803 29.8
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 1.7e-50 205.3 803 29.8
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 3.9e-50 204.1 703 28.4
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 9.0e-47 193.0 574 33.6
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 3.2e-44 184.5 864 29.3
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 2.1e-43 181.8 124 69.4
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 3.4e-38 164.5 757 30.1
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 9.3e-36 156.4 771 28.0
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 4.8e-24 117.5 688 25.7
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 1.9e-20 105.5 768 24.3
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 3.6e-19 101.3 816 24.1
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 2.0e-14 85.5 107 45.8
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 2.5e-12 78.6 239 32.2
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 9.4e-12 76.6 47 80.9
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 7.9e-11 73.6 108 45.4
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 8.8e-10 70.1 763 21.9
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 5.3e-07 60.8 272 32.0
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 4.5e-06 57.8 89 40.4


User provided reference genes

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