Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.6e-55 219.2 107 100.0
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.9e-21 105.9 113 52.2
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.3e-21 105.1 110 51.8
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.3e-21 105.1 110 51.8
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.4e-19 99.8 114 52.6
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.5e-18 96.3 114 52.6
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.6e-18 95.5 108 48.1
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 7.6e-18 94.0 112 51.8
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 7.6e-18 94.0 111 47.7
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.3e-17 93.2 113 49.6
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.7e-17 92.8 106 47.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.9e-17 91.3 100 47.0
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 3.2e-16 88.6 114 50.0
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 5.5e-16 87.8 111 51.4
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 1.2e-15 86.7 114 45.6
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 2.7e-15 85.5 113 44.2
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.7e-15 85.5 105 47.6
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 4.6e-15 84.7 112 47.3
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 7.9e-15 84.0 122 45.1
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.0e-14 83.6 114 44.7
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.3e-14 82.4 105 46.7
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.0e-14 82.0 106 47.2
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 5.1e-14 81.3 104 48.1
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 8.7e-14 80.5 105 46.7
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.5e-13 79.7 100 44.0
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 2.5e-13 79.0 111 44.1
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.3e-13 78.6 119 41.2
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 7.4e-13 77.4 113 43.4
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 7.4e-13 77.4 113 43.4
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 9.6e-13 77.0 105 43.8
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.6e-13 77.0 105 43.8
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 9.6e-13 77.0 105 43.8
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 9.6e-13 77.0 107 46.7
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.3e-12 76.6 101 45.5
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.6e-12 76.3 105 41.9
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 2.1e-12 75.9 108 41.7
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.1e-12 75.9 113 42.5
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 2.1e-12 75.9 114 42.1
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.8e-12 75.5 117 43.6
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.8e-12 75.5 106 42.5
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 4.8e-12 74.7 108 45.4
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 4.8e-12 74.7 101 41.6
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 4.8e-12 74.7 105 42.9
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 6.2e-12 74.3 108 45.4
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.2e-12 73.9 106 42.5
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.1e-11 73.6 105 42.9
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.8e-11 72.8 114 41.2
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.4e-11 72.4 108 44.4
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 2.4e-11 72.4 106 41.5
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 2.4e-11 72.4 119 43.7
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 3.1e-11 72.0 111 41.4
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 3.1e-11 72.0 110 41.8
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.1e-11 72.0 105 43.8
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 4.0e-11 71.6 94 45.7
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 4.0e-11 71.6 108 40.7
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 4.0e-11 71.6 102 42.2
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 5.3e-11 71.2 103 42.7
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 6.9e-11 70.9 104 40.4
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 6.9e-11 70.9 106 40.6
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 6.9e-11 70.9 105 33.3
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.0e-11 70.5 106 40.6
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 9.0e-11 70.5 106 40.6
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 1.5e-10 69.7 104 40.4
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.5e-10 69.7 106 41.5
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.5e-10 69.7 106 42.5
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.0e-10 69.3 103 41.7
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 3.4e-10 68.6 114 38.6
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 3.4e-10 68.6 113 38.9
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 4.5e-10 68.2 112 39.3
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 4.5e-10 68.2 100 42.0
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 5.8e-10 67.8 112 39.3
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.8e-10 67.8 111 44.1
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 7.6e-10 67.4 101 42.6
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.0e-09 67.0 103 38.8
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.0e-09 67.0 107 41.1
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 1.0e-09 67.0 101 38.6
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.0e-09 67.0 114 36.8
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.0e-09 67.0 116 37.1
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.3e-09 66.6 104 40.4
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.3e-09 66.6 112 37.5
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.3e-09 66.6 107 41.1
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 1.3e-09 66.6 132 33.3
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-09 66.2 103 38.8
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 1.7e-09 66.2 107 41.1
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.7e-09 66.2 114 37.7
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.7e-09 66.2 109 39.4
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 2.2e-09 65.9 111 39.6
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.9e-09 65.5 100 41.0
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 3.8e-09 65.1 109 38.5
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 6.5e-09 64.3 109 36.7
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 8.4e-09 63.9 112 42.0
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.1e-08 63.5 107 37.4
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.1e-08 63.5 107 39.3
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.9e-08 62.8 114 39.5
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 2.5e-08 62.4 108 40.7
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 3.2e-08 62.0 102 45.1
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 3.2e-08 62.0 116 36.2
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 4.2e-08 61.6 102 44.1
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 5.5e-08 61.2 116 38.8
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 5.5e-08 61.2 116 39.7
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 5.5e-08 61.2 102 37.3
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 9.3e-08 60.5 122 36.1
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 9.3e-08 60.5 102 37.3
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-07 60.1 109 40.4
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.6e-07 59.7 87 42.5
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.6e-07 59.7 100 42.0
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.6e-07 59.7 100 42.0
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 2.1e-07 59.3 117 36.8
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 2.7e-07 58.9 109 37.6
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 4.6e-07 58.2 107 41.1
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 6.0e-07 57.8 109 39.4
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 7.9e-07 57.4 110 35.5
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.3e-06 56.6 105 39.0
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.8e-06 56.2 107 38.3
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.3e-06 55.8 103 37.9
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 3.0e-06 55.5 114 34.2
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 3.0e-06 55.5 110 34.5
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 3.0e-06 55.5 106 36.8
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 3.9e-06 55.1 124 33.1
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.9e-06 55.1 94 39.4
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.7e-06 54.3 109 37.6
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 8.7e-06 53.9 118 33.9


User provided reference genes

Program Settings