Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 0.0e+00 2605.1 1451 100.0
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 0.0e+00 1751.9 1195 79.6
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 0.0e+00 1689.1 1458 70.9
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 3.4e-294 1015.8 1228 51.7
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 9.4e-228 795.0 1485 43.0
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.5e-212 744.6 1477 42.5
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.2e-206 724.9 1493 41.9
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.4e-199 700.7 1538 35.9
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 5.6e-196 689.5 1588 40.3
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 4.4e-193 679.9 892 47.6
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 2.8e-179 634.0 1727 34.0
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.3e-176 625.2 1239 37.8
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 3.5e-166 590.5 1633 37.3
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 8.1e-163 579.3 1726 33.9
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.7e-160 571.6 1217 35.7
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.4e-159 568.5 1582 34.8
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 4.2e-159 567.0 1739 34.1
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 9.3e-159 565.8 1219 35.4
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.6e-158 563.5 1152 37.2
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 4.6e-158 563.5 850 41.2
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 7.8e-158 562.8 1142 37.5
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 5.1e-157 560.1 1733 31.4
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.6e-155 555.1 1577 36.5
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.0e-149 535.8 894 39.8
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.5e-148 531.9 1126 35.5
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.2e-145 522.3 878 39.7
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 7.6e-145 519.6 1503 32.6
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 7.6e-145 519.6 699 46.1
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 1.3e-144 518.8 1530 35.5
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.6e-142 511.9 1529 35.3
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.3e-141 508.8 1528 34.1
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.3e-141 508.1 1589 36.4
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 1.1e-140 505.8 1547 34.1
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.9e-140 505.0 1528 36.5
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 8.4e-136 489.6 1500 35.0
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 9.3e-135 486.1 1532 35.6
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 3.0e-133 481.1 1580 33.5
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 1.5e-132 478.8 1497 33.7
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.3e-131 475.7 1118 34.7
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 1.6e-131 475.3 1529 33.0
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 6.3e-131 473.4 1179 33.7
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.8e-130 471.9 1512 34.5
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.7e-128 465.3 1592 34.8
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 4.2e-127 460.7 1198 32.7
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 5.5e-127 460.3 924 38.3
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.6e-126 457.6 1576 33.7
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 5.1e-125 453.8 1181 32.1
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.5e-124 452.2 1571 29.0
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.3e-124 451.1 1592 34.5
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.8e-122 445.3 1472 30.5
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.8e-122 445.3 1479 34.2
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 1.3e-120 439.1 1518 31.7
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 2.2e-120 438.3 1025 34.3
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.4e-119 435.6 1467 30.8
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 1.9e-119 435.3 1578 30.1
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 4.7e-118 430.6 1528 34.2
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 2.6e-116 424.9 1596 33.9
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 5.7e-116 423.7 1174 31.6
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 5.7e-116 423.7 1220 31.7
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 5.3e-114 417.2 1494 30.5
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.0e-112 410.6 811 37.5
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 2.0e-108 398.7 1198 29.8
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 2.8e-107 394.8 1081 31.8
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 6.3e-107 393.7 959 33.0
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 1.7e-104 385.6 1500 31.1
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 1.1e-103 382.9 1197 29.7
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 3.2e-103 381.3 1213 29.5
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 4.7e-102 377.5 1486 31.5
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.8e-101 375.6 1497 27.7
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.0e-100 372.1 1652 26.5
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 2.0e-100 372.1 1204 29.7
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 6.3e-99 367.1 1461 32.6
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 2.4e-98 365.2 991 31.8
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 2.2e-96 358.6 1375 33.4
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 7.2e-95 353.6 1190 28.2
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 1.6e-94 352.4 1176 28.3
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 1.2e-92 346.3 1381 30.1
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.8e-91 341.7 1184 27.7
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 8.3e-91 340.1 1118 30.1
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 1.1e-90 339.7 1199 29.4
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 4.5e-89 334.3 1169 28.1
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 7.7e-89 333.6 824 32.2
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 3.3e-87 328.2 1487 27.8
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 2.1e-86 325.5 1453 28.1
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.0e-85 323.2 1622 27.7
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.3e-83 316.2 1077 28.7
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.1e-82 313.2 1472 29.6
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 2.7e-81 308.5 1469 29.7
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 4.5e-81 307.8 1461 28.5
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 5.9e-81 307.4 1479 29.5
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.3e-79 301.6 886 30.6
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.2e-78 299.7 1460 26.0
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 1.4e-77 296.2 1474 26.3
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.8e-77 295.8 1571 28.1
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 2.3e-77 295.4 1453 27.3
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 7.5e-76 290.4 1461 25.9
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 4.9e-75 287.7 1494 24.0
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 9.2e-66 256.9 1437 26.0
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 8.6e-64 250.4 817 29.1
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 2.5e-63 248.8 1133 25.9
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 4.3e-63 248.1 247 57.1
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.8e-61 242.7 1532 28.1
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 6.8e-61 240.7 866 27.3
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 2.6e-60 238.8 1440 24.0
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.3e-59 236.5 433 36.7
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.3e-59 236.5 433 36.7
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 3.7e-59 235.0 892 29.0
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-58 233.4 433 36.5
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 5.2e-53 214.5 155 70.3
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 4.4e-52 211.5 464 33.2
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 5.4e-50 204.5 516 31.0
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.8e-45 189.5 567 42.5
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 4.0e-45 188.3 120 87.5
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 8.4e-43 180.6 1138 23.6
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.5e-39 169.9 1233 26.4
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 2.4e-37 162.5 399 31.1
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 6.9e-37 161.0 370 31.4
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.2e-36 160.2 570 30.5
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.5e-36 159.8 1045 23.3
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 5.8e-36 157.9 285 34.4
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 4.6e-33 148.3 494 29.6
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 3.9e-32 145.2 298 32.2
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.3e-30 140.2 919 33.0
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 6.2e-30 137.9 138 56.5
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 6.5e-27 127.9 325 29.5
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.4e-26 126.7 325 29.5
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 2.1e-25 122.9 328 29.0
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.7e-22 112.1 159 45.3
DCAR_005756 Daucus carota HOM05D005129 ORTHO05D005585 2.6e-20 105.9 184 43.5
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.3e-19 103.6 124 42.7
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 3.9e-16 92.0 502 29.5
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 8.7e-16 90.9 141 35.5
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 1.3e-14 87.0 531 42.2
CSS0038484 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 1.1e-13 84.0 114 49.1
CSS0045402 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 1.4e-13 83.6 113 49.6
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 4.1e-13 82.0 131 40.5
CSS0031745 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 5.3e-13 81.6 113 48.7
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 4.5e-12 78.6 282 26.2
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 5.0e-11 75.1 144 38.9
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 8.5e-11 74.3 179 34.6
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 1.4e-10 73.6 144 36.8
FAN25G0646 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.5e-10 72.8 159 43.4
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 1.6e-09 70.1 126 38.9
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 4.6e-09 68.6 197 31.5
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 1.0e-08 67.4 330 27.9
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 3.0e-08 65.9 88 42.0
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 6.7e-08 64.7 144 36.1
CSS0010685 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 4.3e-07 62.0 131 38.2
CSS0002641 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 5.7e-07 61.6 128 38.3
Medtr5g090215 Medicago truncatula HOM05D005129 ORTHO05D005585 5.7e-07 61.6 107 40.2
CSS0017240 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 7.4e-07 61.2 128 38.3
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 7.4e-07 61.2 186 31.7
PSO675G2011 Papaver somniferum HOM05D026995 ORTHO05D005585 7.4e-07 61.2 79 45.6
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 9.7e-07 60.8 147 31.3
PSO541G0381 Papaver somniferum HOM05D026995 ORTHO05D005585 4.8e-06 58.5 80 43.8
Mapoly0049s0034 Marchantia polymorpha HOM05D019256 ORTHO05D005585 6.3e-06 58.2 111 35.1


User provided reference genes

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