Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.1e-171 606.7 347 100.0
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 5.0e-127 458.4 309 87.4
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 9.4e-118 427.6 308 85.7
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.2e-117 427.2 316 83.9
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 6.8e-116 421.4 300 78.7
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.8e-114 416.0 304 81.6
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.8e-113 413.3 311 82.0
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 2.4e-113 412.9 310 84.2
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 4.1e-113 412.1 299 81.6
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 7.0e-113 411.4 310 83.9
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.0e-113 411.4 324 75.9
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.2e-112 410.6 310 81.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 2.7e-112 409.5 301 85.0
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 7.7e-112 407.9 313 77.6
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 6.5e-111 404.8 301 81.7
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 9.4e-110 401.0 310 79.7
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 9.4e-110 401.0 300 81.0
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.2e-109 400.6 310 75.8
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.6e-109 400.2 310 77.1
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.1e-109 399.8 309 81.2
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 4.7e-109 398.7 301 81.1
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 8.0e-109 397.9 309 75.4
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 6.8e-108 394.8 319 78.7
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 6.8e-108 394.8 310 77.4
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.5e-107 393.7 311 78.8
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 2.0e-107 393.3 310 67.1
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 3.4e-107 392.5 315 78.4
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 3.4e-107 392.5 310 77.7
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.3e-106 390.6 310 72.6
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.3e-106 390.6 301 68.8
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.2e-106 389.8 301 69.8
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 4.8e-106 388.7 309 80.6
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 6.3e-106 388.3 310 78.1
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.4e-105 387.1 311 77.8
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.4e-105 387.1 311 66.6
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.5e-104 382.1 310 72.6
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 7.7e-104 381.3 310 76.1
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.0e-103 380.9 310 75.8
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.3e-103 380.6 312 73.1
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.7e-103 380.2 311 77.8
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 2.3e-103 379.8 333 74.8
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 5.0e-103 378.6 310 65.5
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 6.6e-103 378.3 300 75.7
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 6.6e-103 378.3 316 76.6
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 8.6e-103 377.9 299 73.6
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 9.5e-102 374.4 321 74.5
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.2e-101 374.0 304 67.8
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.2e-101 374.0 311 73.0
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.6e-101 373.6 305 66.2
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.8e-101 372.9 312 67.0
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 2.8e-101 372.9 312 67.0
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 3.6e-101 372.5 312 67.3
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.8e-100 370.2 315 68.9
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.8e-100 370.2 319 64.3
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 2.3e-100 369.8 312 66.7
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.3e-100 369.8 312 71.2
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.0e-100 369.4 302 65.2
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 3.0e-100 369.4 311 73.6
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 4.0e-100 369.0 314 67.2
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 6.8e-100 368.2 312 66.7
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.7e-99 365.2 302 64.6
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 7.5e-99 364.8 347 59.7
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.3e-98 364.0 299 79.3
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 2.8e-98 362.8 314 64.0
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 3.7e-98 362.5 314 64.3
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 3.7e-98 362.5 309 72.2
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 4.9e-98 362.1 344 70.6
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 6.3e-98 361.7 313 63.9
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.8e-97 360.1 287 76.3
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 9.2e-97 357.8 318 61.6
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 2.0e-96 356.7 300 77.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 3.5e-96 355.9 311 71.4
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.0e-95 354.4 327 68.8
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.3e-95 354.0 300 78.3
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.3e-95 354.0 315 72.7
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.9e-95 352.8 310 63.9
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 6.6e-95 351.7 324 67.3
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.9e-94 350.1 301 62.1
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.2e-93 347.4 313 61.0
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.6e-93 347.1 312 62.2
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 6.1e-93 345.1 284 77.5
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 8.0e-93 344.7 312 72.4
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 3.1e-92 342.8 357 59.9
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 3.1e-92 342.8 357 59.9
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 4.0e-92 342.4 292 77.4
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 2.0e-91 340.1 316 69.0
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.7e-90 337.0 314 58.9
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.9e-90 336.3 260 84.6
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.9e-90 335.5 323 70.0
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.9e-90 335.5 323 69.7
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.1e-89 334.3 260 84.2
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 3.2e-89 332.8 300 58.0
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.2e-88 330.9 298 72.1
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.0e-88 328.6 283 77.0
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.9e-87 325.9 288 75.7
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 5.0e-87 325.5 310 61.6
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.1e-86 324.3 292 72.9
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 2.5e-86 323.2 351 60.4
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 2.5e-86 323.2 351 60.4
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 7.1e-81 305.1 312 56.1
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.6e-80 303.9 342 52.0
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 7.8e-80 301.6 314 56.4
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-78 297.4 268 74.3
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 4.3e-78 295.8 263 62.4
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 7.3e-78 295.0 218 80.3
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 6.2e-77 292.0 327 59.3
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 9.9e-75 284.6 268 60.1
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 9.9e-75 284.6 218 80.3
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.7e-74 283.9 247 78.1
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 9.6e-70 268.1 301 52.8
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.5e-67 260.8 232 75.9
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.0e-67 260.4 276 56.2
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 2.0e-67 260.4 223 76.2
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 2.0e-67 260.4 233 78.1
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.6e-67 260.0 193 90.2
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 5.8e-67 258.8 232 76.7
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 6.4e-66 255.4 234 61.5
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.1e-65 254.6 233 61.4
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.6e-64 250.8 241 75.5
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.1e-61 240.4 254 56.7
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 9.0e-60 235.0 294 51.7
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 5.8e-59 232.3 239 57.3
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 9.9e-59 231.5 233 72.5
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.9e-58 229.9 233 71.2
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.2e-56 224.6 232 69.8
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.3e-55 220.3 249 64.7
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 3.3e-54 216.5 130 81.5
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 6.2e-53 212.2 225 55.1
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 6.2e-53 212.2 225 55.1
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 3.8e-50 203.0 243 51.4
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.9e-49 200.7 245 67.8
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.2e-49 199.9 277 43.7
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 4.5e-43 179.5 238 56.7
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 2.2e-42 177.2 287 51.6
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 2.9e-42 176.8 300 41.0
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 2.5e-41 173.7 325 46.8
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.2e-37 159.1 150 72.0
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-36 158.3 158 75.9
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.6e-35 153.7 73 95.9
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 3.8e-34 149.8 117 61.5
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.8e-34 149.8 181 49.2
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 2.3e-31 140.6 162 55.6
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.9e-30 137.5 246 39.4
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.8e-29 133.7 77 72.7
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 3.1e-28 130.2 93 66.7
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.3e-28 129.4 146 69.9
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.5e-26 122.5 117 59.8
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.9e-23 113.2 87 70.1
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 2.8e-21 107.1 59 74.6
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.2e-17 93.6 93 54.8
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 1.6e-16 91.3 130 33.1
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.7e-16 90.5 50 72.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 2.0e-14 84.3 71 67.6
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 6.3e-13 79.3 132 40.9
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 5.3e-12 76.3 90 48.9
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.7e-10 71.2 45 80.0
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 3.8e-10 70.1 104 40.4
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 5.0e-10 69.7 43 81.4


User provided reference genes

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