Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 0.0e+00 1109.7 583 100.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 4.9e-228 794.7 593 74.9
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 7.4e-208 727.6 588 69.4
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.9e-180 636.0 588 64.1
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.8e-164 582.4 588 60.0
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.0e-161 574.3 592 57.3
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.8e-161 573.5 590 58.8
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 8.3e-159 564.7 586 56.8
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.2e-157 560.8 595 57.3
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 3.0e-156 556.2 630 54.0
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 7.3e-155 551.6 586 57.5
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 8.0e-154 548.1 592 55.6
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.3e-151 540.8 602 55.6
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.9e-150 537.0 590 53.6
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.8e-146 523.1 594 54.4
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.3e-143 514.2 610 52.8
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.9e-143 513.1 586 54.1
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.1e-142 511.1 595 53.8
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.6e-141 505.8 593 52.6
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 5.1e-140 502.3 589 53.1
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.1e-139 501.1 600 52.3
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.1e-139 501.1 587 53.3
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 3.3e-139 499.6 595 53.4
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.0e-137 492.7 595 52.1
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 4.4e-136 489.2 583 52.3
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.3e-135 487.6 585 52.3
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 2.4e-134 483.4 588 53.9
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 2.4e-134 483.4 585 51.5
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.5e-133 479.6 366 69.4
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 4.6e-133 479.2 623 49.6
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 3.0e-132 476.5 606 50.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 3.9e-132 476.1 608 50.7
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.1e-131 474.6 589 52.3
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 1.9e-131 473.8 588 50.0
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.5e-128 464.2 601 48.8
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.6e-128 463.4 587 48.7
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 3.4e-128 463.0 603 51.9
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 2.2e-127 460.3 505 57.6
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.1e-126 458.0 587 48.4
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 2.4e-126 456.8 631 46.9
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 4.2e-126 456.1 594 50.0
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 5.4e-126 455.7 602 48.8
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 9.3e-126 454.9 628 49.0
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.2e-125 454.5 585 49.4
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.6e-125 454.1 585 48.2
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 3.9e-124 449.5 630 47.0
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 8.7e-124 448.4 548 52.2
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.5e-123 447.6 586 48.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 7.3e-123 445.3 605 47.3
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.3e-122 444.5 585 48.7
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 2.1e-122 443.7 587 49.2
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 6.2e-122 442.2 617 46.0
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.1e-121 441.4 685 45.0
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.8e-121 440.7 643 47.1
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.8e-121 440.7 589 47.9
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 6.9e-121 438.7 590 48.6
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 5.8e-120 435.6 598 47.8
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 5.8e-120 435.6 597 47.1
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.2e-119 433.7 587 48.4
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.2e-117 427.9 599 47.9
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 4.6e-117 426.0 592 47.8
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 7.9e-117 425.2 605 46.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 5.1e-116 422.5 527 51.0
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.5e-115 421.0 592 48.1
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.9e-115 420.6 595 47.6
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.3e-115 419.5 442 56.3
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 4.0e-113 412.9 597 46.6
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 9.0e-113 411.8 588 47.1
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 4.5e-112 409.5 620 46.1
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 9.9e-112 408.3 589 45.5
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 8.4e-111 405.2 603 46.6
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.4e-110 403.7 598 45.7
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 2.3e-108 397.1 587 47.5
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 7.4e-107 392.1 589 44.3
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 9.6e-107 391.7 596 46.0
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 8.1e-106 388.7 586 44.5
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.1e-105 388.3 587 44.6
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.1e-105 388.3 591 44.7
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.4e-105 387.9 590 45.6
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 3.4e-104 383.3 467 51.2
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 4.5e-104 382.9 576 45.7
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 5.8e-104 382.5 590 44.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.9e-102 377.5 589 44.7
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 9.3e-102 375.2 585 43.4
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 1.3e-100 371.3 593 43.5
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 2.5e-99 367.1 587 43.3
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.6e-98 364.4 589 44.8
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.6e-98 364.4 586 45.1
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 7.9e-93 345.5 637 41.6
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 2.3e-92 344.0 587 42.1
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 5.1e-92 342.8 587 42.2
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 2.5e-91 340.5 589 41.4
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 5.7e-91 339.3 593 42.5
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.1e-89 335.1 609 40.4
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 6.9e-89 332.4 456 46.1
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 6.9e-89 332.4 589 42.3
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.9e-89 332.4 542 44.3
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 1.2e-85 321.6 318 56.6
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 3.6e-85 320.1 589 40.2
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.3e-82 311.6 298 57.7
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 2.8e-82 310.5 390 52.1
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.4e-78 298.1 589 39.7
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 3.6e-77 293.5 589 38.0
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 1.4e-76 291.6 592 38.9
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.2e-72 278.5 549 40.3
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.2e-72 278.5 549 40.3
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 3.8e-71 273.5 588 38.1
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 9.4e-70 268.9 584 37.8
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 2.6e-67 260.8 297 49.5
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 3.5e-64 250.4 493 43.0
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 5.9e-64 249.6 621 34.0
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 8.5e-63 245.7 437 41.0
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-62 245.4 494 42.9
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 2.6e-59 234.2 327 45.0
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 4.7e-53 213.4 473 37.8
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 9.5e-46 189.1 440 38.2
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 2.5e-38 164.5 261 39.5
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 4.3e-38 163.7 476 32.1
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 8.0e-37 159.5 623 30.0
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.7e-34 151.8 265 40.4
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.7e-31 141.7 306 39.2
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 1.9e-30 138.3 214 36.4
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 2.5e-22 111.3 231 41.6
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 4.3e-22 110.5 231 37.2
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.4e-20 105.5 213 39.0
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 4.4e-19 100.5 299 33.1
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.9e-17 95.1 88 61.4
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 4.1e-17 94.0 141 32.6
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 6.0e-16 90.1 215 36.3
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 3.0e-15 87.8 122 45.9
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 8.6e-15 86.3 200 36.5
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.1e-14 85.9 69 58.0
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 1.6e-13 82.0 100 48.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 1.6e-13 82.0 100 48.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 1.6e-13 82.0 100 48.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 1.6e-13 82.0 100 48.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 1.6e-13 82.0 100 48.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 1.6e-13 82.0 100 48.0
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-12 79.0 187 39.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 2.2e-10 71.6 98 44.9
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 4.9e-10 70.5 259 28.6
Hma1.2p1_0081F.1_g042300 Hydrangea macrophylla HOM05D002452 ORTHO05D006766 8.7e-07 59.7 48 64.6
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 9.6e-06 56.2 68 51.5


User provided reference genes

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