Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 7.5e-36 153.3 76 100.0
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 4.4e-28 127.5 76 81.6
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 8.3e-27 123.2 72 81.9
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 2.5e-23 111.7 64 81.2
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 2.5e-23 111.7 64 82.8
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 5.6e-23 110.5 67 76.1
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.2e-22 109.4 66 77.3
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 1.2e-22 109.4 64 81.2
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.6e-22 109.0 67 74.6
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.6e-22 109.0 65 81.5
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 2.1e-22 108.6 62 80.6
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 3.6e-22 107.8 66 74.2
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 3.6e-22 107.8 66 74.2
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.6e-22 107.8 65 80.0
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 4.7e-22 107.5 66 74.2
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 4.7e-22 107.5 68 72.1
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 4.7e-22 107.5 61 82.0
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 4.7e-22 107.5 64 79.7
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 4.7e-22 107.5 66 77.3
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.2e-22 107.1 66 75.8
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.2e-22 107.1 66 75.8
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.2e-22 107.1 66 75.8
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 6.2e-22 107.1 66 75.8
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 8.1e-22 106.7 67 71.6
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 8.1e-22 106.7 65 73.8
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.1e-22 106.7 66 75.8
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.1e-22 106.7 66 74.2
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 8.1e-22 106.7 66 74.2
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 8.1e-22 106.7 64 78.1
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 1.1e-21 106.3 62 80.6
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.1e-21 106.3 66 75.8
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.1e-21 106.3 64 75.0
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.1e-21 106.3 64 75.0
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.1e-21 106.3 65 76.9
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.4e-21 105.9 66 75.8
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 1.4e-21 105.9 67 71.6
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 1.8e-21 105.5 68 72.1
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.8e-21 105.5 64 75.0
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 1.8e-21 105.5 64 76.6
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 2.3e-21 105.1 66 74.2
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 2.3e-21 105.1 61 80.3
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 2.3e-21 105.1 64 75.0
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.3e-21 105.1 66 74.2
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 2.3e-21 105.1 64 76.6
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 3.1e-21 104.8 69 71.0
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 5.2e-21 104.0 61 78.7
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 5.2e-21 104.0 61 78.7
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 6.8e-21 103.6 61 78.7
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 6.8e-21 103.6 64 75.0
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 6.8e-21 103.6 62 77.4
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 8.9e-21 103.2 67 68.7
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 8.9e-21 103.2 74 68.9
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 8.9e-21 103.2 66 72.7
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.9e-21 103.2 63 76.2
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 8.9e-21 103.2 63 76.2
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 1.2e-20 102.8 61 77.0
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.2e-20 102.8 64 73.4
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 1.2e-20 102.8 64 76.6
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.5e-20 102.4 66 69.7
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.5e-20 102.4 65 73.8
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 2.0e-20 102.1 66 69.7
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.0e-20 102.1 61 75.4
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 2.0e-20 102.1 63 73.0
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 2.0e-20 102.1 63 73.0
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 2.6e-20 101.7 62 77.4
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 2.6e-20 101.7 61 73.8
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.6e-20 101.7 61 75.4
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.6e-20 101.7 61 73.8
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 3.4e-20 101.3 61 75.4
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 3.4e-20 101.3 63 74.6
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 4.4e-20 100.9 61 77.0
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 4.4e-20 100.9 61 77.0
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 4.4e-20 100.9 63 74.6
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 5.8e-20 100.5 66 72.7
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 5.8e-20 100.5 66 68.2
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 5.8e-20 100.5 66 68.2
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 7.5e-20 100.1 62 69.4
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 7.5e-20 100.1 61 73.8
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 7.5e-20 100.1 63 71.4
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 7.5e-20 100.1 65 69.2
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 9.9e-20 99.8 65 66.2
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 9.9e-20 99.8 62 69.4
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 9.9e-20 99.8 62 69.4
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 9.9e-20 99.8 68 67.6
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 1.7e-19 99.0 64 70.3
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 1.7e-19 99.0 62 74.2
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 1.7e-19 99.0 65 70.8
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 2.2e-19 98.6 67 70.1
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 2.2e-19 98.6 66 69.7
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 2.9e-19 98.2 62 69.4
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.9e-19 98.2 61 72.1
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 4.9e-19 97.4 62 74.2
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 6.4e-19 97.1 64 67.2
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 6.4e-19 97.1 62 67.7
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 8.3e-19 96.7 64 67.2
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 8.3e-19 96.7 62 67.7
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 8.3e-19 96.7 62 67.7
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 8.3e-19 96.7 61 72.1
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 1.1e-18 96.3 62 67.7
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 1.1e-18 96.3 62 67.7
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 1.1e-18 96.3 62 67.7
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.1e-18 96.3 63 66.7
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.4e-18 95.9 63 68.3
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 1.9e-18 95.5 64 65.6
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 1.9e-18 95.5 64 65.6
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 1.9e-18 95.5 64 65.6
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.9e-18 95.5 64 65.6
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.9e-18 95.5 62 66.1
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 1.9e-18 95.5 61 72.1
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 2.4e-18 95.1 60 70.0
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.1e-18 94.4 59 74.6
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 5.4e-18 94.0 64 68.8
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 7.1e-18 93.6 67 68.7
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 9.2e-18 93.2 64 65.6
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 2.1e-17 92.0 62 67.7
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 3.0e-16 88.2 79 58.2
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 7.3e-15 83.6 96 46.9
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 3.6e-14 81.3 49 77.6
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.1e-13 79.7 44 77.3
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 2.6e-12 75.1 60 56.7
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 2.6e-12 75.1 60 55.0
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 9.9e-12 73.2 60 61.7
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.4e-10 69.3 37 75.7
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 2.4e-10 68.6 36 77.8
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.0e-08 63.2 38 78.9
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 8.7e-08 60.1 37 67.6
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 8.7e-08 60.1 37 67.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.5e-07 59.3 36 66.7
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.9e-07 58.9 36 66.7
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 5.6e-07 57.4 36 61.1
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 5.6e-07 57.4 36 61.1
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 5.6e-07 57.4 36 61.1
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 8.1e-06 53.5 58 46.6


User provided reference genes

Program Settings