Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0200400 Rhododendron simsii HOM05D017178 ORTHO05D012096 2.2e-149 532.3 284 100.0
Dinv29666 Davidia involucrata HOM05D000706 ORTHO05D001554 1.4e-34 151.0 314 37.6
GSVIVG01023195001 Vitis vinifera HOM05D000706 ORTHO05D001554 2.0e-20 104.0 301 30.2
Lj5A276G88 Lonicera japonica HOM05D017178 ORTHO05D012096 7.4e-20 102.1 279 32.6
Manes.10G110800 Manihot esculenta HOM05D000706 ORTHO05D001554 6.3e-19 99.0 281 30.2
Actinidia01625 Actinidia chinensis HOM05D000706 ORTHO05D001554 1.7e-16 90.9 144 46.5
TWI59G0710 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 1.7e-16 90.9 336 26.5
CSS0020172 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001554 5.0e-16 89.4 113 50.4
Lj3P1070T22 Lonicera japonica HOM05D017178 ORTHO05D012096 5.0e-16 89.4 92 53.3
TAR376G1119 Trochodendron aralioides HOM05D000706 ORTHO05D001554 8.5e-16 88.6 304 28.0
Hma1.2p1_0157F.1_g069030 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 7.2e-15 85.5 90 48.9
Hma1.2p1_1368F.1_g278556 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 7.2e-15 85.5 90 48.9
Lj3P665T11 Lonicera japonica HOM05D017178 ORTHO05D012096 1.6e-14 84.3 93 47.3
PSO210G5296 Papaver somniferum HOM05D000706 ORTHO05D001554 2.7e-14 83.6 296 31.8
PSO447G0242 Papaver somniferum HOM05D000706 ORTHO05D001554 2.7e-14 83.6 293 30.7
QL02p102391 Quercus lobata HOM05D043302 ORTHO05D012096 2.7e-14 83.6 295 28.8
CiPaw.06G001000 Carya illinoinensis HOM05D000706 ORTHO05D001554 3.0e-13 80.1 277 27.1
QL02p103028 Quercus lobata HOM05D043302 ORTHO05D012096 3.0e-13 80.1 290 28.6
Lalb_Chr18g0053861 Lupinus albus HOM05D000706 ORTHO05D012096 6.7e-13 79.0 129 34.1
Sabra04G0084500 Salix brachista HOM05D000706 ORTHO05D001554 6.7e-13 79.0 284 28.5
MSTRG.16476 Avicennia marina HOM05D000706 ORTHO05D001554 8.8e-13 78.6 278 28.1
Gohir.D04G177400 Gossypium hirsutum HOM05D000706 ORTHO05D001554 1.5e-12 77.8 282 28.4
MD15G1440800 Malus domestica HOM05D000706 ORTHO05D012096 2.0e-12 77.4 296 28.4
vmacro01003 Vaccinium macrocarpon HOM05D000706 ORTHO05D001554 4.4e-12 76.3 81 55.6
Prupe.1G582800 Prunus persica HOM05D000706 ORTHO05D001554 5.7e-12 75.9 343 23.9
Thecc.02G012800 Theobroma cacao HOM05D000706 ORTHO05D001554 5.7e-12 75.9 281 27.0
Sed0026982 Sechium edule HOM05D000706 ORTHO05D012096 9.7e-12 75.1 103 35.9
Gorai.012G170300 Gossypium raimondii HOM05D000706 ORTHO05D001554 1.3e-11 74.7 282 28.0
Lj6g0005324 Lotus japonicus HOM05D000706 ORTHO05D001554 1.3e-11 74.7 297 25.9
Dinv29618 Davidia involucrata HOM05D000083 ORTHO05D001554 2.2e-11 73.9 91 49.5
Phvul.006G085500 Phaseolus vulgaris HOM05D000706 ORTHO05D012096 2.2e-11 73.9 106 38.7
Cfa019817 Carpinus fangiana HOM05D000706 ORTHO05D001554 3.7e-11 73.2 277 26.0
FvH4_1g25810 Fragaria vesca HOM05D000706 ORTHO05D001554 3.7e-11 73.2 277 26.7
Potri.004G133600 Populus trichocarpa HOM05D000706 ORTHO05D001554 1.1e-10 71.6 281 29.5
Dinv09371 Davidia involucrata HOM05D000706 ORTHO05D001554 1.4e-10 71.2 280 26.8
Glyma.11G208500 Glycine max HOM05D000706 ORTHO05D001554 1.4e-10 71.2 106 34.9
arahy.Tifrunner.gnm1.ann1.3KND2G Arachis hypogaea HOM05D000706 ORTHO05D001554 1.8e-10 70.9 86 44.2
GSVIVG01023170001 Vitis vinifera HOM05D000706 ORTHO05D012096 1.8e-10 70.9 66 48.5
Duzib132G0489 Durio zibethinus HOM05D000706 ORTHO05D001554 2.4e-10 70.5 281 26.7
FAN26G0079 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.4e-10 70.5 274 27.4
Prupe.4G286800 Prunus persica HOM05D000706 ORTHO05D001554 4.1e-10 69.7 279 27.2
RcHm_v2.0_Chr6g0272281 Rosa chinensis HOM05D000706 ORTHO05D012096 4.1e-10 69.7 278 26.3
arahy.Tifrunner.gnm1.ann1.2RX12T Arachis hypogaea HOM05D000706 ORTHO05D001554 1.6e-09 67.8 86 43.0
Migut.B00732 Erythranthe guttata HOM05D000706 ORTHO05D001554 2.0e-09 67.4 291 27.8
FAN23G1421 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.6e-09 67.0 274 25.9
SHI25322 Sapria himalayana HOM05D000706 ORTHO05D012096 2.6e-09 67.0 148 34.5
Gohir.D02G153300 Gossypium hirsutum HOM05D000706 ORTHO05D001554 3.5e-09 66.6 282 28.4
Ca_17061_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 5.9e-09 65.9 80 40.0
MELO3C016482.2 Cucumis melo HOM05D000706 ORTHO05D001554 5.9e-09 65.9 331 26.0
Migut.B01326 Erythranthe guttata HOM05D000706 ORTHO05D001554 5.9e-09 65.9 278 28.1
Lj3P240T17 Lonicera japonica HOM05D017178 ORTHO05D012096 5.9e-09 65.9 77 45.5
Rhsim12G0008900 Rhododendron simsii HOM05D000706 ORTHO05D001554 5.9e-09 65.9 106 47.2
Aqoxy7G00126_Aqoxy7G00127 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 7.7e-09 65.5 298 26.5
ClCG10G007330 Citrullus lanatus HOM05D000706 ORTHO05D001554 1.0e-08 65.1 278 23.7
Thecc.01G144400 Theobroma cacao HOM05D000706 ORTHO05D001554 1.0e-08 65.1 306 26.5
VMungo0540G0276 Vigna mungo HOM05D000706 ORTHO05D012096 1.0e-08 65.1 279 25.1
Sed0004427 Sechium edule HOM05D000706 ORTHO05D001554 2.2e-08 63.9 283 25.4
TAR628G1033 Trochodendron aralioides HOM05D000706 ORTHO05D012096 2.2e-08 63.9 122 31.1
Sopen01g033940 Solanum pennellii HOM05D000706 ORTHO05D001554 2.9e-08 63.5 282 24.8
Cc02_g23440 Coffea canephora HOM05D017178 ORTHO05D012096 3.8e-08 63.2 83 45.8
FAN28G2355 Fragaria x ananassa HOM05D000706 ORTHO05D001554 3.8e-08 63.2 277 24.5
Actinidia16541 Actinidia chinensis HOM05D000706 ORTHO05D001554 6.5e-08 62.4 282 27.3
Eucgr.H05064 Eucalyptus grandis HOM05D000706 ORTHO05D001554 6.5e-08 62.4 278 28.8
Gorai.005G172400 Gossypium raimondii HOM05D000706 ORTHO05D001554 6.5e-08 62.4 277 29.6
SGA_v2.0_scaffold272G46388 Striga asiatica HOM05D000706 ORTHO05D001554 8.5e-08 62.0 85 41.2
Ca_09585_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 1.1e-07 61.6 79 39.2
CSS0020817 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D001554 1.9e-07 60.8 280 26.1
Cc02_g27620 Coffea canephora HOM05D000706 ORTHO05D001554 2.5e-07 60.5 283 25.8
EL10Ac4g09693 Beta vulgaris HOM05D000706 ORTHO05D001554 3.2e-07 60.1 277 26.7
PSO541G1600 Papaver somniferum HOM05D000706 ORTHO05D001554 3.2e-07 60.1 294 26.2
FAN19G2540 Fragaria x ananassa HOM05D000706 ORTHO05D001554 4.2e-07 59.7 274 24.5
GSVIVG01023197001 Vitis vinifera HOM05D000706 ORTHO05D012096 4.2e-07 59.7 98 32.7
Solyc01g086950.4 Solanum lycopersicum HOM05D000706 ORTHO05D001554 5.5e-07 59.3 282 23.8
AT5G08430 Arabidopsis thaliana HOM05D000706 ORTHO05D001554 7.2e-07 58.9 288 26.4
Medtr3g064260 Medicago truncatula HOM05D000706 ORTHO05D001554 9.4e-07 58.5 286 25.2
Aa31LG3G18110 Aethionema arabicum HOM05D000706 ORTHO05D001554 1.2e-06 58.2 297 28.3
TWI79G1627 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 1.2e-06 58.2 291 25.8
Nitab4.5_0003361g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001554 2.1e-06 57.4 284 24.3
EL10Ac6g14021 Beta vulgaris HOM05D000706 ORTHO05D001554 2.7e-06 57.0 109 32.1
MD15G1140400 Malus domestica HOM05D000706 ORTHO05D001554 6.1e-06 55.8 279 23.7
GSVIVG01000269001 Vitis vinifera HOM05D000706 ORTHO05D001554 8.0e-06 55.5 92 33.7


User provided reference genes

Program Settings