Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 2.6e-54 215.7 121 100.0
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 4.9e-13 78.6 72 48.6
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 2.4e-12 76.3 125 42.4
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 3.2e-12 75.9 120 40.0
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 7.1e-12 74.7 126 38.9
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 9.3e-12 74.3 128 35.2
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.2e-11 73.9 72 44.4
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 1.6e-11 73.6 88 45.5
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.1e-11 73.2 124 40.3
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 2.1e-11 73.2 121 36.4
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 2.1e-11 73.2 121 36.4
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.7e-11 72.8 126 34.9
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.7e-11 72.8 126 34.9
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.7e-11 72.8 126 34.9
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.7e-11 72.8 126 34.9
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.7e-11 72.8 126 34.9
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.7e-11 72.8 126 34.9
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.5e-11 72.4 126 34.9
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 4.6e-11 72.0 122 39.3
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 6.0e-11 71.6 121 40.5
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 6.0e-11 71.6 123 38.2
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 7.9e-11 71.2 67 52.2
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 1.3e-10 70.5 75 49.3
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.3e-10 70.5 74 44.6
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 3.0e-10 69.3 74 45.9
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 3.9e-10 68.9 87 37.9
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 5.1e-10 68.6 123 38.2
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 5.1e-10 68.6 85 42.4
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 5.1e-10 68.6 58 48.3
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 6.6e-10 68.2 58 53.4
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 8.7e-10 67.8 74 41.9
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 8.7e-10 67.8 74 41.9
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 8.7e-10 67.8 130 31.5
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.1e-09 67.4 74 40.5
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.5e-09 67.0 68 47.1
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.9e-09 66.6 122 39.3
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 1.9e-09 66.6 122 35.2
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.9e-09 66.6 87 39.1
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 1.9e-09 66.6 64 46.9
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 2.5e-09 66.2 124 35.5
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 2.5e-09 66.2 127 32.3
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.5e-09 66.2 74 44.6
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 2.5e-09 66.2 64 46.9
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 3.3e-09 65.9 60 50.0
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 3.3e-09 65.9 60 48.3
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 4.3e-09 65.5 73 47.9
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 4.3e-09 65.5 72 45.8
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 4.3e-09 65.5 85 40.0
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 5.6e-09 65.1 58 48.3
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 5.6e-09 65.1 58 48.3
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 9.6e-09 64.3 48 52.1
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 9.6e-09 64.3 72 43.1
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 1.3e-08 63.9 46 60.9
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 1.3e-08 63.9 130 31.5
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.6e-08 63.5 122 38.5
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 2.1e-08 63.2 74 43.2
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 2.1e-08 63.2 116 36.2
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 2.1e-08 63.2 58 51.7
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 2.1e-08 63.2 58 51.7
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 2.1e-08 63.2 71 42.3
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 2.8e-08 62.8 58 50.0
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.8e-08 62.8 58 44.8
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 2.8e-08 62.8 72 47.2
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 3.6e-08 62.4 71 45.1
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 4.8e-08 62.0 46 60.9
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 4.8e-08 62.0 46 60.9
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 6.2e-08 61.6 46 58.7
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 6.2e-08 61.6 46 58.7
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 8.1e-08 61.2 69 43.5
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 1.1e-07 60.8 46 58.7
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 1.1e-07 60.8 58 44.8
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.1e-07 60.8 77 42.9
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 1.4e-07 60.5 121 37.2
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 1.4e-07 60.5 46 58.7
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 1.8e-07 60.1 72 40.3
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.8e-07 60.1 72 40.3
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 3.1e-07 59.3 47 48.9
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 4.0e-07 58.9 46 56.5
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 4.0e-07 58.9 46 56.5
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 4.0e-07 58.9 46 56.5
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 5.3e-07 58.5 75 42.7
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 6.9e-07 58.2 72 40.3
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 9.0e-07 57.8 45 53.3
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 9.0e-07 57.8 75 40.0
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.2e-06 57.4 72 38.9
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.2e-06 57.4 60 43.3
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 1.5e-06 57.0 46 54.3
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 1.5e-06 57.0 46 54.3
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 1.5e-06 57.0 46 54.3
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 2.6e-06 56.2 40 52.5
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 5.8e-06 55.1 47 48.9
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 7.6e-06 54.7 75 36.0
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 9.9e-06 54.3 82 32.9
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 9.9e-06 54.3 82 32.9


User provided reference genes

Program Settings