Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 2.2e-99 365.5 173 100.0
vmacro11863 Vaccinium macrocarpon HOM05D006733 ORTHO05D008406 4.5e-20 102.1 57 82.5
COL.COLO4_27167 Corchorus olitorius HOM05D006733 ORTHO05D008406 1.9e-18 96.7 56 73.2
Gohir.D05G356200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.5e-18 96.3 62 74.2
Gohir.D05G356800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.5e-18 96.3 56 80.4
Gorai.009G389000 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.5e-18 96.3 56 80.4
Duzib170G0610 Durio zibethinus HOM05D006733 ORTHO05D008406 4.2e-18 95.5 56 78.6
RcHm_v2.0_Chr5g0033741 Rosa chinensis HOM05D006733 ORTHO05D008406 7.2e-18 94.7 58 79.3
Duzib170G0030 Durio zibethinus HOM05D006733 ORTHO05D008406 1.2e-17 94.0 56 76.8
Gohir.D05G356700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.2e-17 94.0 56 78.6
Gorai.009G388600 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.2e-17 94.0 56 78.6
Gorai.009G388900 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.2e-17 94.0 56 78.6
Gohir.A04G030100 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.6e-17 93.6 56 78.6
Gohir.A04G030300 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.1e-17 93.2 56 75.0
Gorai.009G388200 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.1e-17 93.2 56 75.0
QL08p021800 Quercus lobata HOM05D006733 ORTHO05D008406 2.1e-17 93.2 59 67.8
CiPaw.11G169300 Carya illinoinensis HOM05D006733 ORTHO05D008406 3.6e-17 92.4 58 70.7
Gohir.D05G355800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 3.6e-17 92.4 56 76.8
MD11G1246800 Malus domestica HOM05D006733 ORTHO05D008406 6.1e-17 91.7 66 66.7
Eucgr.F01127 Eucalyptus grandis HOM05D006733 ORTHO05D008406 8.0e-17 91.3 59 71.2
FAN21G3200 Fragaria x ananassa HOM05D006733 ORTHO05D008406 8.0e-17 91.3 58 77.6
Thecc.07G089300 Theobroma cacao HOM05D006733 ORTHO05D008406 1.0e-16 90.9 56 73.2
Actinidia12807 Actinidia chinensis HOM05D006733 ORTHO05D008406 1.4e-16 90.5 58 70.7
Gohir.A11G284800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.4e-16 90.5 57 75.4
FAN11G2570 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.8e-16 90.1 58 75.9
FAN25G0136 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.8e-16 90.1 58 75.9
FvH4_3g20030 Fragaria vesca HOM05D006733 ORTHO05D008406 5.2e-16 88.6 58 74.1
MD03G1227300 Malus domestica HOM05D006733 ORTHO05D008406 5.2e-16 88.6 60 66.7
MD03G1227500 Malus domestica HOM05D006733 ORTHO05D008406 5.2e-16 88.6 60 66.7
Oeu024912.1 Olea europaea HOM05D006733 ORTHO05D008406 6.8e-16 88.2 60 73.3
PGR083G2703 Punica granatum HOM05D006733 ORTHO05D008406 8.8e-16 87.8 59 67.8
FAN16G0436 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.5e-15 87.0 58 74.1
PGR031G3292 Punica granatum HOM05D006733 ORTHO05D008406 2.0e-15 86.7 55 69.1
Hma1.2p1_0885F.1_g232600 Hydrangea macrophylla HOM05D006733 ORTHO05D008406 4.4e-15 85.5 66 63.6
Nitab4.5_0000332g0130 Nicotiana tabacum HOM05D006733 ORTHO05D008406 4.4e-15 85.5 60 65.0
Haze_09425 Corylus avellana HOM05D006733 ORTHO05D008406 5.7e-15 85.1 59 64.4
Nitab4.5_0005764g0010 Nicotiana tabacum HOM05D006733 ORTHO05D008406 5.7e-15 85.1 60 65.0
Gohir.D11G297700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 7.5e-15 84.7 58 69.0
Gorai.007G322600 Gossypium raimondii HOM05D006733 ORTHO05D008406 7.5e-15 84.7 58 69.0
Glyma.06G242900 Glycine max HOM05D006733 ORTHO05D008406 9.8e-15 84.3 58 65.5
Rhsim06G0198600 Rhododendron simsii HOM05D006733 ORTHO05D008406 9.8e-15 84.3 40 95.0
Cfa020588 Carpinus fangiana HOM05D006733 ORTHO05D008406 2.2e-14 83.2 59 62.7
Gorai.009G388700 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.2e-14 83.2 56 73.2
Migut.M00808 Erythranthe guttata HOM05D006733 ORTHO05D008406 3.7e-14 82.4 57 73.7
TWI39G1253 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 3.7e-14 82.4 58 62.1
Prupe.4G181500 Prunus persica HOM05D006733 ORTHO05D008406 4.8e-14 82.0 60 60.0
SalBow7G1032 Salvia bowleyana HOM05D006733 ORTHO05D008406 4.8e-14 82.0 58 72.4
Glyma.12G154300 Glycine max HOM05D006733 ORTHO05D008406 6.3e-14 81.6 58 63.8
DCAR_013104 Daucus carota HOM05D006733 ORTHO05D008406 8.3e-14 81.3 60 61.7
CiPaw.12G118000 Carya illinoinensis HOM05D006733 ORTHO05D008406 1.1e-13 80.9 60 63.3
Lalb_Chr01g0006561 Lupinus albus HOM05D006733 ORTHO05D008406 2.4e-13 79.7 59 61.0
Atru.chr2.2618 Acer truncatum HOM05D006733 ORTHO05D008406 4.1e-13 79.0 59 61.0
Atru.chr2.2701 Acer truncatum HOM05D006733 ORTHO05D008406 4.1e-13 79.0 59 61.0
MBI06_g04174_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 4.1e-13 79.0 58 62.1
Atru.chr2.2617 Acer truncatum HOM05D006733 ORTHO05D008406 5.4e-13 78.6 59 62.7
Atru.chr2.2702 Acer truncatum HOM05D006733 ORTHO05D008406 5.4e-13 78.6 59 62.7
Duzib213G0299 Durio zibethinus HOM05D006733 ORTHO05D008406 5.4e-13 78.6 60 65.0
Oeu037948.1 Olea europaea HOM05D006733 ORTHO05D008406 7.0e-13 78.2 60 68.3
GSVIVG01014340001 Vitis vinifera HOM05D006733 ORTHO05D008406 7.0e-13 78.2 62 54.8
Aqoxy4G00811 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 1.2e-12 77.4 60 58.3
Manes.15G086700 Manihot esculenta HOM05D006733 ORTHO05D008406 2.0e-12 76.6 56 62.5
SalBow7G4025 Salvia bowleyana HOM05D006733 ORTHO05D008406 2.0e-12 76.6 58 67.2
TWI38G1652 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 2.7e-12 76.3 59 57.6
Sc16g0006980 Simmondsia chinensis HOM05D006733 ORTHO05D008406 3.5e-12 75.9 59 61.0
arahy.Tifrunner.gnm1.ann1.XP1NDF Arachis hypogaea HOM05D006733 ORTHO05D008406 4.5e-12 75.5 58 58.6
Cc05_g12060 Coffea canephora HOM05D006733 ORTHO05D008406 5.9e-12 75.1 60 60.0
CARHR090380 Cardamine hirsuta HOM05D006733 ORTHO05D008406 1.3e-11 73.9 62 54.8
Hund02223 Selenicereus undatus HOM05D006733 ORTHO05D008406 1.3e-11 73.9 56 60.7
BolC3t17038H Brassica oleracea HOM05D006733 ORTHO05D008406 1.7e-11 73.6 60 55.0
Gohir.D01G050200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.9e-11 72.8 58 65.5
Gorai.002G070100 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.9e-11 72.8 58 65.5
Nn1g04086 Nelumbo nucifera HOM05D006733 ORTHO05D008406 2.9e-11 72.8 56 62.5
BcaC01g03880 Brassica carinata HOM05D006733 ORTHO05D008406 3.8e-11 72.4 60 53.3
C03p47630 Brassica napus HOM05D006733 ORTHO05D008406 3.8e-11 72.4 60 53.3
Lj3g0014029 Lotus japonicus HOM05D006733 ORTHO05D008406 3.8e-11 72.4 60 56.7
arahy.Tifrunner.gnm1.ann1.KTTP1X Arachis hypogaea HOM05D006733 ORTHO05D008406 5.0e-11 72.0 57 63.2
arahy.Tifrunner.gnm1.ann1.W6Q2IR Arachis hypogaea HOM05D006733 ORTHO05D008406 8.5e-11 71.2 57 63.2
Ca_24272_v3 Cicer arietinum L. HOM05D006733 ORTHO05D008406 8.5e-11 71.2 58 53.4
Potri.001G400100 Populus trichocarpa HOM05D006733 ORTHO05D008406 8.5e-11 71.2 55 58.2
Sc03g0009960 Simmondsia chinensis HOM05D006733 ORTHO05D008406 8.5e-11 71.2 60 56.7
Aa31LG8G2570 Aethionema arabicum HOM05D006733 ORTHO05D008406 1.5e-10 70.5 55 54.5
Medtr8g060850 Medicago truncatula HOM05D006733 ORTHO05D008406 1.5e-10 70.5 58 56.9
Thhalv10021853m.g Eutrema salsugineum HOM05D006733 ORTHO05D008406 1.9e-10 70.1 62 51.6
Os01g0200700 Oryza sativa ssp. japonica HOM05D006733 ORTHO05D008406 1.9e-10 70.1 59 55.9
Sed0028027 Sechium edule HOM05D006733 ORTHO05D008406 2.5e-10 69.7 59 59.3
A05p34080 Brassica napus HOM05D006733 ORTHO05D008406 3.2e-10 69.3 57 52.6
BraA05t22229Z Brassica rapa HOM05D006733 ORTHO05D008406 3.2e-10 69.3 57 52.6
Carub.0003s1505 Capsella rubella HOM05D006733 ORTHO05D008406 4.2e-10 68.9 61 50.8
CAN.G739.12 Capsicum annuum HOM05D006733 ORTHO05D008406 7.2e-10 68.2 58 58.6
BcaC05g28981 Brassica carinata HOM05D006733 ORTHO05D008406 9.4e-10 67.8 57 50.9
BolC5t33870H Brassica oleracea HOM05D006733 ORTHO05D008406 9.4e-10 67.8 57 50.9
Aqoxy4G00809 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 1.2e-09 67.4 59 55.9
HPP92_020054 Vanilla planifolia HOM05D006733 ORTHO05D008406 1.2e-09 67.4 55 52.7
Manes.03G110500 Manihot esculenta HOM05D006733 ORTHO05D008406 2.1e-09 66.6 53 62.3
BcaB06g29562 Brassica carinata HOM05D006733 ORTHO05D008406 8.0e-09 64.7 57 49.1
ClCG10G006940 Citrullus lanatus HOM05D006733 ORTHO05D008406 8.0e-09 64.7 49 59.2
MBI07_g30176_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 8.0e-09 64.7 47 66.0
PGSC0003DMG400015318 Solanum tuberosum HOM05D006733 ORTHO05D008406 8.0e-09 64.7 57 50.9
Nn1g04087 Nelumbo nucifera HOM05D006733 ORTHO05D008406 1.0e-08 64.3 60 55.0
Potri.011G118900 Populus trichocarpa HOM05D006733 ORTHO05D008406 1.4e-08 63.9 52 57.7
Hund22902 Selenicereus undatus HOM05D006733 ORTHO05D008406 1.8e-08 63.5 56 53.6
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.0e-08 62.4 129 30.2
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.2e-08 62.0 62 43.5
Gohir.A04G029916 Gossypium hirsutum HOM05D006733 ORTHO05D008406 5.2e-08 62.0 39 76.9
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.5e-07 60.5 143 28.7
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 3.4e-07 59.3 67 43.3
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.5e-07 58.2 99 33.3
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.8e-07 57.8 126 30.2
DCAR_020986 Daucus carota HOM05D006733 ORTHO05D008406 9.8e-07 57.8 58 51.7
PSO541G4814 Papaver somniferum HOM05D006733 ORTHO05D008406 1.3e-06 57.4 55 52.7
CsaV3_3G006310 Cucumis sativus L. HOM05D006733 ORTHO05D008406 2.2e-06 56.6 49 51.0


User provided reference genes

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