Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0198200 Rhododendron simsii HOM05D001108 ORTHO05D009800 2.1e-280 968.4 481 100.0
Rhsim06G0198100 Rhododendron simsii HOM05D008239 ORTHO05D009800 1.1e-87 328.2 420 50.5
CAN.G481.34 Capsicum annuum HOM05D001108 ORTHO05D001619 3.7e-11 73.9 39 94.9
Cfa016211 Carpinus fangiana HOM05D001108 ORTHO05D001619 3.7e-11 73.9 39 94.9
Haze_00234 Corylus avellana HOM05D001108 ORTHO05D001619 3.7e-11 73.9 39 94.9
Oeu041071.1 Olea europaea HOM05D001108 ORTHO05D001619 3.7e-11 73.9 39 94.9
Rhsim03G0211000 Rhododendron simsii HOM05D001108 ORTHO05D001619 3.7e-11 73.9 39 94.9
Solyc03g082940.3 Solanum lycopersicum HOM05D001108 ORTHO05D001619 3.7e-11 73.9 39 94.9
Sopen03g022750 Solanum pennellii HOM05D001108 ORTHO05D001619 3.7e-11 73.9 39 94.9
PGSC0003DMG400018525 Solanum tuberosum HOM05D001108 ORTHO05D001619 3.7e-11 73.9 39 94.9
vmacro06399 Vaccinium macrocarpon HOM05D001108 ORTHO05D001619 3.7e-11 73.9 39 94.9
Haze_09118 Corylus avellana HOM05D001108 ORTHO05D001619 4.8e-11 73.6 66 59.1
MSTRG.27015 Avicennia marina HOM05D001108 ORTHO05D001619 8.2e-11 72.8 39 92.3
CSS0007816 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D001619 8.2e-11 72.8 39 92.3
ECA233G3887 Erigeron canadensis HOM05D001108 ORTHO05D001619 8.2e-11 72.8 39 92.3
ECA233G4864 Erigeron canadensis HOM05D001108 ORTHO05D001619 8.2e-11 72.8 39 92.3
HanXRQChr04g0111491 Helianthus annuus HOM05D001108 ORTHO05D001619 8.2e-11 72.8 39 92.3
Nitab4.5_0000548g0020 Nicotiana tabacum HOM05D001108 ORTHO05D001619 8.2e-11 72.8 39 92.3
Nitab4.5_0014900g0010 Nicotiana tabacum HOM05D001108 ORTHO05D001619 8.2e-11 72.8 39 92.3
Oeu037048.1 Olea europaea HOM05D001108 ORTHO05D001619 8.2e-11 72.8 39 92.3
GSVIVG01038575001 Vitis vinifera HOM05D001108 ORTHO05D001619 8.2e-11 72.8 39 92.3
arahy.Tifrunner.gnm1.ann1.EZRH7V Arachis hypogaea HOM05D001108 ORTHO05D001619 1.1e-10 72.4 61 67.2
Atru.chr12.2249 Acer truncatum HOM05D001108 ORTHO05D001619 1.4e-10 72.0 39 89.7
Dinv35347 Davidia involucrata HOM05D001108 ORTHO05D001619 1.4e-10 72.0 39 89.7
Lsat_1_v5_gn_0_44640 Lactuca sativa HOM05D001108 ORTHO05D001619 1.4e-10 72.0 39 89.7
Lj3A899T65 Lonicera japonica HOM05D001108 ORTHO05D001619 1.4e-10 72.0 39 89.7
Manes.01G040200 Manihot esculenta HOM05D001108 ORTHO05D001619 1.4e-10 72.0 39 89.7
Manes.05G191500 Manihot esculenta HOM05D001108 ORTHO05D001619 1.4e-10 72.0 39 89.7
Potri.012G017500 Populus trichocarpa HOM05D001108 ORTHO05D001619 1.4e-10 72.0 39 89.7
Potri.015G010400 Populus trichocarpa HOM05D001108 ORTHO05D001619 1.4e-10 72.0 39 89.7
Sabra15G0008500 Salix brachista HOM05D001108 ORTHO05D001619 1.4e-10 72.0 39 89.7
MSTRG.8642 Avicennia marina HOM05D001108 ORTHO05D001619 1.8e-10 71.6 39 89.7
Dinv29261 Davidia involucrata HOM05D001108 ORTHO05D001619 1.8e-10 71.6 39 89.7
HanXRQChr08g0225111 Helianthus annuus HOM05D001108 ORTHO05D001619 1.8e-10 71.6 41 85.4
Nitab4.5_0000015g0270 Nicotiana tabacum HOM05D001108 ORTHO05D001619 1.8e-10 71.6 39 89.7
Nitab4.5_0001717g0020 Nicotiana tabacum HOM05D001108 ORTHO05D001619 1.8e-10 71.6 39 89.7
SalBow2G2478 Salvia bowleyana HOM05D001108 ORTHO05D001619 1.8e-10 71.6 39 89.7
SalBow4G2365 Salvia bowleyana HOM05D001108 ORTHO05D001619 1.8e-10 71.6 39 89.7
arahy.Tifrunner.gnm1.ann1.4S3PH7 Arachis hypogaea HOM05D001108 ORTHO05D001619 3.1e-10 70.9 39 89.7
Ca_16724_v3 Cicer arietinum L. HOM05D001108 ORTHO05D001619 3.1e-10 70.9 39 87.2
Ciclev10023883m.g Citrus clementina HOM05D001108 ORTHO05D001619 3.1e-10 70.9 39 87.2
Cc02_g01330 Coffea canephora HOM05D001108 ORTHO05D001619 3.1e-10 70.9 39 89.7
Lj1g0002117 Lotus japonicus HOM05D001108 ORTHO05D001619 3.1e-10 70.9 39 87.2
Manes.01G040400 Manihot esculenta HOM05D001108 ORTHO05D001619 3.1e-10 70.9 39 89.7
Sed0006363 Sechium edule HOM05D001108 ORTHO05D001619 3.1e-10 70.9 39 89.7
CANSAT21G1310 Cannabis sativa HOM05D001108 ORTHO05D001619 4.1e-10 70.5 39 89.7
Migut.F01017 Erythranthe guttata HOM05D001108 ORTHO05D001619 4.1e-10 70.5 39 89.7
Glyma.04G233700 Glycine max HOM05D001108 ORTHO05D001619 4.1e-10 70.5 39 87.2
Glyma.06G131100 Glycine max HOM05D001108 ORTHO05D001619 4.1e-10 70.5 39 87.2
Hma1.2p1_2994F.1_g331380 Hydrangea macrophylla HOM05D001108 ORTHO05D001619 4.1e-10 70.5 39 89.7
Phvul.009G050600 Phaseolus vulgaris HOM05D001108 ORTHO05D001619 4.1e-10 70.5 39 87.2
VMungo1309G1871 Vigna mungo HOM05D001108 ORTHO05D001619 4.1e-10 70.5 39 87.2
COL.COLO4_16798 Corchorus olitorius HOM05D001108 ORTHO05D001619 5.3e-10 70.1 39 87.2
Migut.F00195 Erythranthe guttata HOM05D001108 ORTHO05D001619 5.3e-10 70.1 39 87.2
Hma1.2p1_0591F.1_g185210 Hydrangea macrophylla HOM05D001108 ORTHO05D001619 5.3e-10 70.1 39 87.2
Nitab4.5_0001570g0020 Nicotiana tabacum HOM05D001108 ORTHO05D001619 5.3e-10 70.1 39 87.2
Peaxi162Scf00075g00013 Petunia axillaris HOM05D001108 ORTHO05D001619 5.3e-10 70.1 39 87.2
Sabra12G0015000 Salix brachista HOM05D001108 ORTHO05D001619 5.3e-10 70.1 39 87.2
ClCG01G000320 Citrullus lanatus HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 87.2
ClCG01G000340 Citrullus lanatus HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 87.2
MELO3C005893.2 Cucumis melo HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 87.2
MELO3C005895.2 Cucumis melo HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 87.2
CsaV3_5G000380 Cucumis sativus L. HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 87.2
CsaV3_5G000400 Cucumis sativus L. HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 87.2
DCAR_010590 Daucus carota HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 84.6
Lj3P898T14 Lonicera japonica HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 84.6
Psat5g075760 Pisum sativum HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 84.6
QL09p007920 Quercus lobata HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 87.2
Sed0027572 Sechium edule HOM05D001108 ORTHO05D001619 6.9e-10 69.7 39 87.2
CANSAT54G0401 Cannabis sativa HOM05D001108 ORTHO05D001619 9.0e-10 69.3 39 87.2
Cc02_g01310 Coffea canephora HOM05D001108 ORTHO05D001619 9.0e-10 69.3 39 89.7
Eucgr.D01707 Eucalyptus grandis HOM05D001108 ORTHO05D001619 9.0e-10 69.3 39 84.6
Medtr3g491860 Medicago truncatula HOM05D001108 ORTHO05D001619 9.0e-10 69.3 39 87.2
Atru.chr9.1952 Acer truncatum HOM05D001108 ORTHO05D001619 1.2e-09 68.9 39 84.6
Aqoxy6G01650 Aquilegia oxysepala HOM05D001108 ORTHO05D001619 1.2e-09 68.9 45 77.8
Ciclev10018814m.g Citrus clementina HOM05D001108 ORTHO05D001619 1.2e-09 68.9 39 84.6
TWI60G1621 Tripterygium wilfordii HOM05D001108 ORTHO05D001619 1.2e-09 68.9 39 79.5
Nn3g18954 Nelumbo nucifera HOM05D001108 ORTHO05D001619 2.0e-09 68.2 39 84.6
Solyc06g052030.3 Solanum lycopersicum HOM05D001108 ORTHO05D001619 2.0e-09 68.2 39 87.2
Sopen06g018080 Solanum pennellii HOM05D001108 ORTHO05D001619 2.0e-09 68.2 39 87.2
PGSC0003DMG400019597 Solanum tuberosum HOM05D001108 ORTHO05D001619 2.0e-09 68.2 39 87.2
TAR374G1341 Trochodendron aralioides HOM05D001108 ORTHO05D001619 2.0e-09 68.2 39 82.1
THA.LOC104811908 Tarenaya hassleriana HOM05D001108 ORTHO05D001619 2.6e-09 67.8 46 71.7
Thecc.03G201700 Theobroma cacao HOM05D001108 ORTHO05D001619 2.6e-09 67.8 39 84.6
Duzib205G1706 Durio zibethinus HOM05D001108 ORTHO05D001619 3.4e-09 67.4 39 84.6
Glyma.08G025600 Glycine max HOM05D001108 ORTHO05D001619 3.4e-09 67.4 39 84.6
PSO502G0025 Papaver somniferum HOM05D001108 ORTHO05D001619 3.4e-09 67.4 39 84.6
PSO675G2801 Papaver somniferum HOM05D001108 ORTHO05D001619 3.4e-09 67.4 39 84.6
Peaxi162Scf00740g00229 Petunia axillaris HOM05D001108 ORTHO05D001619 3.4e-09 67.4 39 84.6
Phvul.002G301300 Phaseolus vulgaris HOM05D001108 ORTHO05D001619 3.4e-09 67.4 39 84.6
Lalb_Chr05g0223931 Lupinus albus HOM05D001108 ORTHO05D001619 4.5e-09 67.0 39 84.6
Nn5g27571 Nelumbo nucifera HOM05D001108 ORTHO05D001619 4.5e-09 67.0 39 82.1
Sed0013227 Sechium edule HOM05D001108 ORTHO05D001619 4.5e-09 67.0 39 84.6
SGA_v2.0_scaffold192G40525 Striga asiatica HOM05D001108 ORTHO05D001619 4.5e-09 67.0 39 84.6
TPR.G17295 Trifolium pratense HOM05D001108 ORTHO05D001619 4.5e-09 67.0 38 84.2
Lalb_Chr16g0390741 Lupinus albus HOM05D001108 ORTHO05D001619 5.9e-09 66.6 39 82.1
QL02p029330 Quercus lobata HOM05D001108 ORTHO05D001619 5.9e-09 66.6 39 82.1
TWI15G0589 Tripterygium wilfordii HOM05D001108 ORTHO05D001619 5.9e-09 66.6 39 79.5
TWI81G0337 Tripterygium wilfordii HOM05D001108 ORTHO05D001619 5.9e-09 66.6 39 79.5
TAR636G2439 Trochodendron aralioides HOM05D001108 ORTHO05D001619 5.9e-09 66.6 39 84.6
Sed0011668 Sechium edule HOM05D001108 ORTHO05D001619 7.6e-09 66.2 39 82.1
TPR.G3455 Trifolium pratense HOM05D001108 ORTHO05D001619 7.6e-09 66.2 39 84.6
COL.COLO4_20425 Corchorus olitorius HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
FvH4_7g32050 Fragaria vesca HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
FAN01G1351 Fragaria x ananassa HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
FAN06G3604 Fragaria x ananassa HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
FAN10G2432 Fragaria x ananassa HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
FAN10G4085 Fragaria x ananassa HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
Gohir.A09G185200 Gossypium hirsutum HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
Gohir.D09G180100 Gossypium hirsutum HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
Gorai.006G202100 Gossypium raimondii HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
Lj4g0013757 Lotus japonicus HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 79.5
RcHm_v2.0_Chr1g0381661 Rosa chinensis HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 84.6
TPR.G33646 Trifolium pratense HOM05D001108 ORTHO05D001619 1.0e-08 65.9 39 79.5
arahy.Tifrunner.gnm1.ann1.0YC2K0 Arachis hypogaea HOM05D001108 ORTHO05D001619 1.3e-08 65.5 39 82.1
arahy.Tifrunner.gnm1.ann1.QE5WJZ Arachis hypogaea HOM05D001108 ORTHO05D001619 1.3e-08 65.5 39 82.1
Cfa011963 Carpinus fangiana HOM05D001108 ORTHO05D001619 1.3e-08 65.5 39 79.5
CiPaw.12G080200 Carya illinoinensis HOM05D001108 ORTHO05D001619 1.3e-08 65.5 39 76.9
Duzib084G0676 Durio zibethinus HOM05D001108 ORTHO05D001619 1.3e-08 65.5 39 82.1
Glyma.05G219300 Glycine max HOM05D001108 ORTHO05D001619 1.3e-08 65.5 39 82.1
Lalb_Chr09g0332141 Lupinus albus HOM05D001108 ORTHO05D001619 1.3e-08 65.5 39 79.5
Aa31LG3G9630 Aethionema arabicum HOM05D001108 ORTHO05D001619 1.7e-08 65.1 39 79.5
Aqoxy5G04306 Aquilegia oxysepala HOM05D001108 ORTHO05D001619 1.7e-08 65.1 39 84.6
CAN.G312.8 Capsicum annuum HOM05D001108 ORTHO05D001619 1.7e-08 65.1 39 84.6
Dinv41180 Davidia involucrata HOM05D008239 ORTHO05D009800 1.7e-08 65.1 172 33.1
SGA_v2.0_scaffold13G06543 Striga asiatica HOM05D001108 ORTHO05D001619 1.7e-08 65.1 39 82.1
Aqoxy5G04284 Aquilegia oxysepala HOM05D001108 ORTHO05D001619 2.2e-08 64.7 46 73.9
AL8G28180 Arabidopsis lyrata HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 79.5
AT5G53480 Arabidopsis thaliana HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 79.5
BcaB08g35711 Brassica carinata HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 79.5
A10p10910 Brassica napus HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 79.5
C09p43300 Brassica napus HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 79.5
BolC9t57212H Brassica oleracea HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 79.5
BraA10t43180Z Brassica rapa HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 79.5
Carub.0008s1364 Capsella rubella HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 79.5
MD07G1294100 Malus domestica HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 82.1
Medtr3g491840 Medicago truncatula HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 84.6
Prupe.2G313900 Prunus persica HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 82.1
Sp6g15610 Schrenkiella parvula HOM05D001108 ORTHO05D001619 2.2e-08 64.7 39 79.5
TAR375G0138 Trochodendron aralioides HOM05D001108 ORTHO05D001619 2.2e-08 64.7 38 81.6
vmacro22053 Vaccinium macrocarpon HOM05D008239 ORTHO05D009800 2.2e-08 64.7 167 32.9
Oeu010696.3 Olea europaea HOM05D001108 ORTHO05D001619 2.9e-08 64.3 59 62.7
Gohir.A12G248500 Gossypium hirsutum HOM05D001108 ORTHO05D001619 3.8e-08 63.9 39 79.5
Gohir.D12G249300 Gossypium hirsutum HOM05D001108 ORTHO05D001619 3.8e-08 63.9 39 79.5
Gorai.008G267400 Gossypium raimondii HOM05D001108 ORTHO05D001619 3.8e-08 63.9 39 79.5
TAR629G1774 Trochodendron aralioides HOM05D001108 ORTHO05D001619 3.8e-08 63.9 39 82.1
Thhalv10012652m.g Eutrema salsugineum HOM05D001108 ORTHO05D001619 5.0e-08 63.5 39 76.9
MD01G1223400 Malus domestica HOM05D001108 ORTHO05D001619 5.0e-08 63.5 39 79.5
VMungo0251G0461 Vigna mungo HOM05D001108 ORTHO05D001619 5.0e-08 63.5 39 79.5
Ca_17456_v3 Cicer arietinum L. HOM05D001108 ORTHO05D001619 6.5e-08 63.2 39 76.9
Ca_30591_v3 Cicer arietinum L. HOM05D001108 ORTHO05D001619 6.5e-08 63.2 39 76.9
Duzib205G0514 Durio zibethinus HOM05D001108 ORTHO05D001619 6.5e-08 63.2 38 81.6
SGA_v2.0_scaffold55G19788 Striga asiatica HOM05D001108 ORTHO05D001619 6.5e-08 63.2 39 79.5
Thecc.03G201600 Theobroma cacao HOM05D001108 ORTHO05D001619 6.5e-08 63.2 39 82.1
MBI06_g06486_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D001619 8.4e-08 62.8 39 74.4
Psat0s4722g0080 Pisum sativum HOM05D001108 ORTHO05D001619 8.4e-08 62.8 39 79.5
Psat3g160720 Pisum sativum HOM05D001129 ORTHO05D001619 8.4e-08 62.8 39 79.5
CARHR266610 Cardamine hirsuta HOM05D001108 ORTHO05D001619 1.1e-07 62.4 39 74.4
Gohir.A09G185100 Gossypium hirsutum HOM05D001108 ORTHO05D001619 1.1e-07 62.4 39 79.5
Gohir.D09G180000 Gossypium hirsutum HOM05D001108 ORTHO05D001619 1.1e-07 62.4 39 79.5
Gorai.006G202000 Gossypium raimondii HOM05D001108 ORTHO05D001619 1.1e-07 62.4 39 79.5
Dinv12606 Davidia involucrata HOM05D008239 ORTHO05D009800 1.4e-07 62.0 151 32.5
Duzib084G1392 Durio zibethinus HOM05D001108 ORTHO05D001619 1.4e-07 62.0 46 69.6
DCAR_014549 Daucus carota HOM05D001108 ORTHO05D001619 1.9e-07 61.6 39 74.4
HPP92_006334 Vanilla planifolia HOM05D001108 ORTHO05D001619 2.5e-07 61.2 39 79.5
HPP92_027871 Vanilla planifolia HOM05D001108 ORTHO05D001619 2.5e-07 61.2 39 79.5
Hma1.2p1_0120F.1_g057080 Hydrangea macrophylla HOM05D008239 ORTHO05D009800 3.2e-07 60.8 151 31.1
Medtr8g099785 Medicago truncatula HOM05D001108 ORTHO05D001619 3.2e-07 60.8 39 79.5
CDE04G0828 Ceratophyllum demersum HOM05D001108 ORTHO05D001619 7.2e-07 59.7 40 72.5
Gohir.A12G248400 Gossypium hirsutum HOM05D001108 ORTHO05D001619 7.2e-07 59.7 39 71.8
Gohir.D12G249200 Gossypium hirsutum HOM05D001108 ORTHO05D001619 7.2e-07 59.7 39 71.8
Gorai.008G267300 Gossypium raimondii HOM05D001108 ORTHO05D001619 7.2e-07 59.7 39 71.8
Dinv38087 Davidia involucrata HOM05D008239 ORTHO05D009800 9.3e-07 59.3 151 32.5
PGR031G1739 Punica granatum HOM05D001108 ORTHO05D001619 2.1e-06 58.2 39 71.8
TPR.G33620 Trifolium pratense HOM05D001108 ORTHO05D001619 2.1e-06 58.2 38 73.7
Rhsim03G0009800 Rhododendron simsii HOM05D008239 ORTHO05D009800 2.7e-06 57.8 372 25.3
Sc13g0010010 Simmondsia chinensis HOM05D001108 ORTHO05D001619 2.7e-06 57.8 39 71.8
HanXRQChr02g0038791 Helianthus annuus HOM05D001108 ORTHO05D038515 3.5e-06 57.4 38 76.3
MD14G1134000 Malus domestica HOM05D001108 ORTHO05D001619 7.9e-06 56.2 38 73.7


User provided reference genes

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