Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 8.6e-125 450.3 221 100.0
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 1.4e-119 433.0 221 96.8
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.5e-116 422.2 221 93.2
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 4.3e-116 421.4 221 93.7
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 4.3e-116 421.4 221 93.7
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.1e-115 419.1 221 91.4
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.8e-115 418.7 221 91.9
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 2.8e-115 418.7 221 92.3
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 6.2e-115 417.5 221 91.4
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 6.2e-115 417.5 221 92.3
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 6.2e-115 417.5 221 92.3
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.1e-114 416.8 221 91.4
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 1.4e-114 416.4 221 91.9
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.4e-114 416.4 221 91.9
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.4e-114 416.4 221 91.9
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.4e-114 416.4 221 90.0
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.1e-114 415.2 221 90.5
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 3.1e-114 415.2 221 91.4
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.1e-114 415.2 221 90.0
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 4.0e-114 414.8 221 91.4
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 4.0e-114 414.8 221 92.3
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 6.9e-114 414.1 221 91.9
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.2e-113 413.3 221 91.4
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.2e-113 413.3 220 90.5
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.5e-113 412.9 221 91.0
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 2.0e-113 412.5 221 91.0
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.6e-113 412.1 221 90.5
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 2.6e-113 412.1 221 90.0
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 2.6e-113 412.1 221 90.0
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.4e-113 411.8 221 91.0
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 3.4e-113 411.8 220 90.5
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 4.4e-113 411.4 219 90.4
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 5.8e-113 411.0 221 90.0
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 7.6e-113 410.6 221 89.6
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.3e-112 409.8 221 89.1
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.2e-112 409.1 221 90.0
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.2e-112 409.1 221 90.5
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 2.2e-112 409.1 221 89.6
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 2.9e-112 408.7 221 89.1
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.8e-112 408.3 221 88.7
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.8e-112 408.3 221 89.6
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 6.4e-112 407.5 221 89.1
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 6.4e-112 407.5 221 89.1
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 6.4e-112 407.5 221 88.7
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.4e-111 406.4 219 90.0
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.4e-111 405.6 221 88.7
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 2.4e-111 405.6 221 90.0
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 3.2e-111 405.2 219 89.0
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 4.2e-111 404.8 214 90.7
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 5.4e-111 404.4 221 89.6
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 5.4e-111 404.4 221 88.7
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.4e-111 404.4 218 89.9
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 5.4e-111 404.4 221 89.1
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 5.4e-111 404.4 221 88.2
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 7.1e-111 404.1 221 89.1
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 7.1e-111 404.1 221 88.2
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.2e-110 403.3 219 88.1
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.2e-110 403.3 219 88.1
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.2e-110 403.3 219 88.1
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.2e-110 403.3 219 88.1
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.2e-110 403.3 219 88.1
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.2e-110 403.3 221 87.3
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.2e-110 403.3 219 88.6
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.6e-110 402.9 221 87.3
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 2.1e-110 402.5 221 87.3
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.1e-110 402.5 221 87.8
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 2.1e-110 402.5 231 85.7
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.1e-110 402.5 221 88.7
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 2.1e-110 402.5 219 89.0
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.7e-110 402.1 221 88.7
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 2.7e-110 402.1 221 88.7
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 3.5e-110 401.7 221 87.8
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 3.5e-110 401.7 221 88.2
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 6.0e-110 401.0 219 87.2
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 6.0e-110 401.0 221 86.9
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 6.0e-110 401.0 221 87.3
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 7.9e-110 400.6 221 88.7
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.3e-109 399.8 221 87.8
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.7e-109 399.4 221 88.2
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 1.7e-109 399.4 221 86.4
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.7e-109 399.4 221 88.7
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.7e-109 399.4 221 88.7
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.7e-109 399.4 221 87.8
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 2.3e-109 399.1 221 86.4
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 2.3e-109 399.1 219 87.2
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 3.0e-109 398.7 221 86.4
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 3.0e-109 398.7 221 87.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 3.0e-109 398.7 221 88.2
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 3.0e-109 398.7 221 88.2
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 3.9e-109 398.3 220 87.7
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 6.6e-109 397.5 221 87.3
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 6.6e-109 397.5 221 88.7
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 8.7e-109 397.1 221 87.3
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.1e-108 396.7 221 87.8
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.1e-108 396.7 226 85.8
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.9e-108 396.0 221 87.3
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 1.9e-108 396.0 221 86.9
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.3e-108 395.2 218 87.6
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.3e-108 395.2 218 87.6
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 4.3e-108 394.8 221 86.9
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 4.3e-108 394.8 221 86.9
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 5.6e-108 394.4 221 85.5
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 5.6e-108 394.4 221 86.9
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 9.6e-108 393.7 221 86.9
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 9.6e-108 393.7 221 86.9
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.3e-107 393.3 219 86.3
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.8e-107 392.1 221 86.0
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 4.8e-107 391.3 217 86.2
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 4.8e-107 391.3 219 85.8
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 6.2e-107 391.0 248 77.8
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.8e-106 389.4 204 92.6
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 2.4e-106 389.0 214 87.4
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 9.0e-106 387.1 214 86.0
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 9.0e-106 387.1 219 84.5
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.7e-104 382.9 200 92.5
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 6.4e-104 380.9 221 82.8
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.1e-103 380.2 219 84.0
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 2.4e-103 379.0 234 82.1
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.2e-102 376.7 192 96.4
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 7.9e-102 374.0 221 80.5
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 1.8e-101 372.9 200 89.5
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.1e-100 370.2 221 83.7
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 6.2e-99 364.4 221 81.9
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 8.1e-99 364.0 221 83.7
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 5.3e-98 361.3 190 91.1
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.8e-96 355.1 221 75.1
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 3.2e-95 352.1 190 88.9
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 7.1e-95 350.9 215 82.8
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 4.6e-94 348.2 221 79.2
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 7.9e-94 347.4 214 75.2
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.3e-93 345.9 192 88.0
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 2.3e-93 345.9 182 91.2
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 5.7e-92 341.3 221 71.0
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.1e-90 337.0 182 88.5
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 5.3e-90 334.7 182 90.1
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 2.0e-89 332.8 213 77.5
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 2.9e-88 328.9 208 80.8
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 2.9e-88 328.9 222 69.8
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 1.5e-84 316.6 221 67.4
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 4.5e-81 305.1 174 85.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.3e-80 303.5 227 72.2
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.2e-78 297.0 221 72.4
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 2.0e-73 279.6 159 84.9
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 5.0e-72 275.0 152 88.2
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.2e-64 249.6 146 82.2
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 5.7e-60 235.0 209 62.7
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.3e-56 223.8 119 89.9
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.5e-55 219.5 165 65.5
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 2.9e-48 196.1 119 78.2
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 6.5e-48 194.9 158 65.2
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.9e-47 193.4 136 73.5
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 2.2e-43 179.9 177 57.6
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 7.7e-41 171.4 105 77.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.8e-37 160.2 86 87.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.4e-36 155.6 178 48.9
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 3.7e-35 152.5 96 75.0
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 8.3e-27 124.8 196 43.4
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 2.4e-26 123.2 170 42.9
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 9.2e-26 121.3 66 89.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 9.2e-26 121.3 66 89.4
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 1.3e-19 100.9 269 30.9
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 7.8e-17 91.7 158 40.5
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.9e-16 89.4 47 89.4
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 3.9e-16 89.4 45 91.1
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 8.6e-16 88.2 85 56.5
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 2.5e-15 86.7 79 57.0
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.5e-12 77.4 92 47.8
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 6.4e-11 72.0 103 41.7
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 4.6e-09 65.9 57 54.4
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.3e-08 63.5 43 74.4
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.3e-08 63.5 32 90.6
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.6e-08 62.0 34 82.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 1.1e-07 61.2 53 62.3
Actinidia37470 Actinidia chinensis HOM05D003815 ORTHO05D004218 2.1e-06 57.0 35 77.1
Solyc04g079010.1 Solanum lycopersicum HOM05D003815 ORTHO05D004580 4.7e-06 55.8 31 74.2
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 6.2e-06 55.5 38 71.1


User provided reference genes

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