Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0189600 Rhododendron simsii HOM05D007372 ORTHO05D009318 1.1e-116 423.3 210 100.0
Rhsim04G0161000 Rhododendron simsii HOM05D007372 ORTHO05D009318 1.1e-41 174.1 107 85.0
Rhsim06G0093000 Rhododendron simsii HOM05D007372 ORTHO05D009318 1.6e-27 127.1 81 82.7
vmacro22649 Vaccinium macrocarpon HOM05D007372 ORTHO05D009318 6.1e-19 98.6 82 67.1
Dinv02471 Davidia involucrata HOM05D007372 ORTHO05D009318 1.3e-16 90.9 81 63.0
Hma1.2p1_0678F.1_g202150 Hydrangea macrophylla HOM05D007372 ORTHO05D009318 1.1e-15 87.8 81 60.5
vmacro22532 Vaccinium macrocarpon HOM05D007372 ORTHO05D009318 1.2e-14 84.3 74 62.2
TAR381G1194 Trochodendron aralioides HOM05D007372 ORTHO05D009318 2.0e-14 83.6 83 56.6
Actinidia17763 Actinidia chinensis HOM05D007372 ORTHO05D009318 1.0e-13 81.3 84 53.6
MBI01_g42373_MAGBIO Magnolia biondii HOM05D007372 ORTHO05D009318 8.5e-13 78.2 84 53.6
Migut.C00154 Erythranthe guttata HOM05D007372 ORTHO05D009318 1.1e-12 77.8 77 57.1
MBI01_g29001_MAGBIO Magnolia biondii HOM05D007372 ORTHO05D009318 2.5e-12 76.6 84 53.6
Manes.02G185100 Manihot esculenta HOM05D007372 ORTHO05D009318 4.2e-12 75.9 81 54.3
BolC6t39633H Brassica oleracea HOM05D007372 ORTHO05D009318 9.4e-12 74.7 69 52.2
SalBow7G3614 Salvia bowleyana HOM05D007372 ORTHO05D009318 9.4e-12 74.7 84 52.4
Sopen04g028150 Solanum pennellii HOM05D007372 ORTHO05D009318 1.6e-11 73.9 53 67.9
A07p37910 Brassica napus HOM05D007372 ORTHO05D009318 2.1e-11 73.6 84 45.2
C06p45810 Brassica napus HOM05D007372 ORTHO05D009318 2.1e-11 73.6 84 46.4
Nn5g28866 Nelumbo nucifera HOM05D007372 ORTHO05D009318 2.1e-11 73.6 87 52.9
Cc10_g06440 Coffea canephora HOM05D007372 ORTHO05D009318 3.6e-11 72.8 76 53.9
Lsat_1_v5_gn_9_42440 Lactuca sativa HOM05D007372 ORTHO05D009318 3.6e-11 72.8 70 60.0
Nitab4.5_0007403g0010 Nicotiana tabacum HOM05D007372 ORTHO05D009318 3.6e-11 72.8 89 51.7
PGR042G0625 Punica granatum HOM05D007372 ORTHO05D009318 3.6e-11 72.8 68 57.4
GSVIVG01013700001 Vitis vinifera HOM05D007372 ORTHO05D009318 4.7e-11 72.4 79 53.2
ClCG08G007220 Citrullus lanatus HOM05D007372 ORTHO05D009318 6.1e-11 72.0 85 49.4
Eucgr.F02675 Eucalyptus grandis HOM05D007372 ORTHO05D009318 6.1e-11 72.0 46 76.1
Solyc04g072040.1 Solanum lycopersicum HOM05D007372 ORTHO05D009318 6.1e-11 72.0 89 50.6
VMungo0464G0612 Vigna mungo HOM05D007372 ORTHO05D009318 6.1e-11 72.0 82 54.9
CAN.G1183.23 Capsicum annuum HOM05D007372 ORTHO05D009318 7.9e-11 71.6 83 49.4
Gohir.D02G067900 Gossypium hirsutum HOM05D007372 ORTHO05D009318 7.9e-11 71.6 85 51.8
Gorai.005G076700 Gossypium raimondii HOM05D007372 ORTHO05D009318 7.9e-11 71.6 85 51.8
Peaxi162Scf00360g00916 Petunia axillaris HOM05D007372 ORTHO05D009318 7.9e-11 71.6 51 70.6
PSO675G2246 Papaver somniferum HOM05D007372 ORTHO05D009318 1.0e-10 71.2 59 61.0
Sabra02G0050700 Salix brachista HOM05D007372 ORTHO05D009318 1.8e-10 70.5 78 51.3
BraA07t31356Z Brassica rapa HOM05D007372 ORTHO05D009318 2.3e-10 70.1 84 46.4
CARHR291030 Cardamine hirsuta HOM05D007372 ORTHO05D009318 2.3e-10 70.1 63 52.4
Nitab4.5_0004252g0050 Nicotiana tabacum HOM05D007372 ORTHO05D009318 2.3e-10 70.1 88 50.0
Phvul.004G088900 Phaseolus vulgaris HOM05D007372 ORTHO05D009318 2.3e-10 70.1 82 53.7
THA.LOC104809747 Tarenaya hassleriana HOM05D007372 ORTHO05D009318 2.3e-10 70.1 68 54.4
arahy.Tifrunner.gnm1.ann1.1F4W04 Arachis hypogaea HOM05D007372 ORTHO05D009318 3.0e-10 69.7 84 50.0
arahy.Tifrunner.gnm1.ann1.CL5RXG Arachis hypogaea HOM05D007372 ORTHO05D009318 3.0e-10 69.7 84 50.0
Potri.002G062800 Populus trichocarpa HOM05D007372 ORTHO05D009318 3.0e-10 69.7 80 50.0
Ciclev10001857m.g Citrus clementina HOM05D007372 ORTHO05D009318 3.9e-10 69.3 60 56.7
Lj2g0008181 Lotus japonicus HOM05D007372 ORTHO05D009318 3.9e-10 69.3 82 50.0
PSO541G3596 Papaver somniferum HOM05D007372 ORTHO05D009318 3.9e-10 69.3 89 47.2
TPR.G19684 Trifolium pratense HOM05D007372 ORTHO05D009318 3.9e-10 69.3 84 46.4
Aa31LG4G8880 Aethionema arabicum HOM05D007372 ORTHO05D009318 6.7e-10 68.6 62 53.2
AT1G71760 Arabidopsis thaliana HOM05D007372 ORTHO05D009318 6.7e-10 68.6 64 50.0
MSTRG.969 Avicennia marina HOM05D007372 ORTHO05D009318 6.7e-10 68.6 83 48.2
CsaV3_6G004890 Cucumis sativus L. HOM05D007372 ORTHO05D009318 6.7e-10 68.6 62 58.1
Gohir.A02G062200 Gossypium hirsutum HOM05D007372 ORTHO05D009318 6.7e-10 68.6 85 50.6
Sed0016879 Sechium edule HOM05D007372 ORTHO05D009318 6.7e-10 68.6 82 50.0
Sp5g26780 Schrenkiella parvula HOM05D007372 ORTHO05D009318 8.8e-10 68.2 46 67.4
ATR1120G103 Amborella trichopoda HOM05D007372 ORTHO05D009318 1.1e-09 67.8 54 63.0
BcaC08g46602 Brassica carinata HOM05D007372 ORTHO05D009318 1.5e-09 67.4 75 45.3
Psat0ss32450g0040 Pisum sativum HOM05D007372 ORTHO05D009318 1.5e-09 67.4 83 49.4
TPR.G19681 Trifolium pratense HOM05D007372 ORTHO05D009318 1.5e-09 67.4 86 45.3
AL2G31330 Arabidopsis lyrata HOM05D007372 ORTHO05D009318 2.0e-09 67.0 46 65.2
ECA232G4628 Erigeron canadensis HOM05D007372 ORTHO05D009318 2.6e-09 66.6 70 55.7
Duzib093G1977 Durio zibethinus HOM05D007372 ORTHO05D009318 3.3e-09 66.2 83 48.2
Thhalv10019840m.g Eutrema salsugineum HOM05D007372 ORTHO05D009318 3.3e-09 66.2 85 44.7
Glyma.02G077500 Glycine max HOM05D007372 ORTHO05D009318 3.3e-09 66.2 46 69.6
Aqoxy6G00438 Aquilegia oxysepala HOM05D007372 ORTHO05D009318 4.4e-09 65.9 83 49.4
COL.COLO4_24577 Corchorus olitorius HOM05D007372 ORTHO05D009318 4.4e-09 65.9 79 53.2
SGA_v2.0_scaffold82G26208 Striga asiatica HOM05D007372 ORTHO05D009318 4.4e-09 65.9 91 46.2
Carub.0002s1852 Capsella rubella HOM05D007372 ORTHO05D009318 5.7e-09 65.5 85 42.4
MELO3C019965.2 Cucumis melo HOM05D007372 ORTHO05D009318 5.7e-09 65.5 82 47.6
Hund17499 Selenicereus undatus HOM05D007372 ORTHO05D009318 5.7e-09 65.5 46 63.0
Cpa.g.sc26.120 Carica papaya HOM05D007372 ORTHO05D009318 7.4e-09 65.1 46 67.4
Medtr1191s0010 Medicago truncatula HOM05D007372 ORTHO05D009318 1.3e-08 64.3 88 46.6
Ah.05g168260 Amaranthus hybridus HOM05D007372 ORTHO05D009318 2.8e-08 63.2 81 40.7
TWI60G0690 Tripterygium wilfordii HOM05D007372 ORTHO05D009318 6.3e-08 62.0 66 50.0
Ca_04659_v3 Cicer arietinum L. HOM05D007372 ORTHO05D009318 8.2e-08 61.6 80 45.0
Cfa018264 Carpinus fangiana HOM05D007372 ORTHO05D009318 1.1e-07 61.2 76 42.1
AUR62034913 Chenopodium quinoa HOM05D007372 ORTHO05D009318 1.1e-07 61.2 53 56.6
Sc26g0002770 Simmondsia chinensis HOM05D007372 ORTHO05D009318 1.1e-07 61.2 50 56.0
CiPaw.15G011400 Carya illinoinensis HOM05D007372 ORTHO05D009318 1.4e-07 60.8 58 55.2
Lalb_Chr19g0129991 Lupinus albus HOM05D007372 ORTHO05D009318 1.8e-07 60.5 47 66.0
Medtr0571s0030 Medicago truncatula HOM05D007372 ORTHO05D009318 1.8e-07 60.5 44 63.6
EL10Ac1g01626 Beta vulgaris HOM05D007372 ORTHO05D009318 2.4e-07 60.1 44 63.6
MD05G1035800 Malus domestica HOM05D007372 ORTHO05D009318 3.1e-07 59.7 56 60.7
CANSAT25G1084 Cannabis sativa HOM05D007372 ORTHO05D009318 4.1e-07 59.3 85 44.7
Haze_17824 Corylus avellana HOM05D007372 ORTHO05D009318 5.3e-07 58.9 69 44.9
unitig_46.g18009 Utricularia gibba HOM05D007372 ORTHO05D009318 7.0e-07 58.5 84 45.2
FvH4_2g12850 Fragaria vesca HOM05D007372 ORTHO05D009318 2.6e-06 56.6 56 53.6
Prupe.8G043800 Prunus persica HOM05D007372 ORTHO05D009318 4.5e-06 55.8 51 60.8
RcHm_v2.0_Chr6g0273891 Rosa chinensis HOM05D007372 ORTHO05D009318 4.5e-06 55.8 64 48.4
HPP92_004582 Vanilla planifolia HOM05D007372 ORTHO05D009318 5.9e-06 55.5 46 47.8
Zm00001eb361480 Zea mays HOM05D007372 ORTHO05D009318 5.9e-06 55.5 46 56.5


User provided reference genes

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