Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.8e-42 174.9 88 100.0
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 2.9e-15 85.1 85 54.1
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.4e-14 82.8 102 50.0
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.9e-14 82.4 89 53.9
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 5.5e-14 80.9 93 45.2
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.2e-13 79.7 95 60.0
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 7.9e-13 77.0 98 41.8
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.0e-12 76.6 76 53.9
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 1.4e-12 76.3 91 47.3
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.8e-12 75.9 96 49.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.3e-12 75.5 76 51.3
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 3.9e-12 74.7 95 46.3
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 5.1e-12 74.3 76 51.3
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 6.7e-12 73.9 96 42.7
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 1.1e-11 73.2 72 51.4
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 2.5e-11 72.0 98 43.9
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 3.3e-11 71.6 98 44.9
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 3.3e-11 71.6 96 45.8
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 4.3e-11 71.2 72 50.0
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 4.3e-11 71.2 79 53.2
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.7e-11 70.9 109 40.4
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.7e-11 70.9 105 42.9
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 5.7e-11 70.9 86 44.2
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 7.4e-11 70.5 98 40.8
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.4e-11 70.5 104 40.4
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 7.4e-11 70.5 104 40.4
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.3e-10 69.7 89 47.2
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.3e-10 69.7 79 51.9
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 1.3e-10 69.7 98 39.8
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 1.7e-10 69.3 96 41.7
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.7e-10 69.3 89 49.4
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.2e-10 68.9 100 42.0
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 2.2e-10 68.9 76 47.4
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 2.8e-10 68.6 100 42.0
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 2.8e-10 68.6 91 48.4
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 3.7e-10 68.2 94 43.6
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 3.7e-10 68.2 88 45.5
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 3.7e-10 68.2 94 41.5
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 4.8e-10 67.8 94 43.6
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 4.8e-10 67.8 84 45.2
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 6.3e-10 67.4 106 41.5
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 6.3e-10 67.4 100 41.0
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 8.2e-10 67.0 82 47.6
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 8.2e-10 67.0 82 48.8
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 8.2e-10 67.0 92 46.7
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 8.2e-10 67.0 85 44.7
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 1.1e-09 66.6 89 43.8
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 1.1e-09 66.6 72 48.6
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 1.1e-09 66.6 72 48.6
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 1.4e-09 66.2 89 43.8
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 1.8e-09 65.9 92 42.4
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 1.8e-09 65.9 94 41.5
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.8e-09 65.9 103 41.7
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-09 65.5 88 44.3
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-09 65.5 92 42.4
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 3.1e-09 65.1 88 44.3
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 3.1e-09 65.1 94 43.6
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 3.1e-09 65.1 88 44.3
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 3.1e-09 65.1 74 48.6
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 3.1e-09 65.1 90 45.6
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 3.1e-09 65.1 86 45.3
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 3.1e-09 65.1 77 48.1
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 5.3e-09 64.3 88 42.0
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 5.3e-09 64.3 88 42.0
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 5.3e-09 64.3 88 44.3
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 5.3e-09 64.3 104 38.5
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 6.9e-09 63.9 88 43.2
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 6.9e-09 63.9 98 39.8
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 6.9e-09 63.9 88 40.9
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 6.9e-09 63.9 88 40.9
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 6.9e-09 63.9 104 36.5
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 9.1e-09 63.5 92 41.3
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 9.1e-09 63.5 110 36.4
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 9.1e-09 63.5 107 41.1
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.2e-08 63.2 101 39.6
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 1.5e-08 62.8 92 40.2
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.5e-08 62.8 77 44.2
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 2.0e-08 62.4 86 41.9
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 2.0e-08 62.4 93 43.0
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 2.0e-08 62.4 105 37.1
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 2.0e-08 62.4 96 40.6
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 2.6e-08 62.0 92 41.3
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 2.6e-08 62.0 92 41.3
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 2.6e-08 62.0 92 41.3
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 2.6e-08 62.0 90 35.6
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.6e-08 62.0 78 47.4
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 3.4e-08 61.6 96 40.6
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 3.4e-08 61.6 95 40.0
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 3.4e-08 61.6 92 41.3
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 3.4e-08 61.6 92 41.3
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.4e-08 61.6 95 40.0
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 3.4e-08 61.6 88 40.9
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 3.4e-08 61.6 88 40.9
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.5e-08 61.2 94 42.6
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 4.5e-08 61.2 113 38.1
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 5.9e-08 60.8 102 37.3
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 5.9e-08 60.8 101 37.6
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 5.9e-08 60.8 93 39.8
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 7.7e-08 60.5 92 41.3
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 7.7e-08 60.5 79 43.0
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 7.7e-08 60.5 97 38.1
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 7.7e-08 60.5 64 51.6
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 7.7e-08 60.5 106 34.9
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 7.7e-08 60.5 97 40.2
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 1.0e-07 60.1 99 36.4
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.0e-07 60.1 104 39.4
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.3e-07 59.7 130 33.1
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 1.3e-07 59.7 85 41.2
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.3e-07 59.7 90 42.2
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.3e-07 59.7 104 39.4
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.7e-07 59.3 132 31.1
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 2.2e-07 58.9 82 42.7
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 2.2e-07 58.9 91 40.7
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 2.9e-07 58.5 92 38.0
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.9e-07 58.5 109 34.9
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 2.9e-07 58.5 83 43.4
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 3.8e-07 58.2 79 45.6
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.8e-07 58.2 103 39.8
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.8e-07 58.2 79 43.0
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 5.0e-07 57.8 96 40.6
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.5e-07 57.4 104 38.5
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 6.5e-07 57.4 114 31.6
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 1.4e-06 56.2 104 33.7
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 1.9e-06 55.8 98 37.8
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 1.9e-06 55.8 99 37.4
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.9e-06 55.8 91 40.7
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.9e-06 55.8 106 36.8
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.9e-06 55.8 106 36.8
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 3.2e-06 55.1 91 37.4
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 3.2e-06 55.1 91 37.4
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 3.2e-06 55.1 91 37.4
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 3.2e-06 55.1 106 34.9
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 3.2e-06 55.1 88 38.6
MBI07_g23436_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 3.2e-06 55.1 93 37.6
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 3.2e-06 55.1 69 43.5
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.2e-06 54.7 83 39.8
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 5.5e-06 54.3 91 37.4
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 5.5e-06 54.3 108 33.3
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 5.5e-06 54.3 113 31.0
Solyc10g007580.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 5.5e-06 54.3 77 44.2
Sopen10g003500 Solanum pennellii HOM05D004022 ORTHO05D004090 5.5e-06 54.3 77 44.2
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 9.4e-06 53.5 106 34.0
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 9.4e-06 53.5 107 37.4


User provided reference genes

Program Settings