Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.7e-304 1048.5 517 100.0
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.1e-186 655.2 482 72.0
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.9e-179 631.7 447 74.7
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.1e-178 630.6 480 70.2
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.4e-178 630.2 442 75.1
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 8.6e-176 620.9 482 68.5
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.9e-175 619.8 481 68.4
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 5.2e-173 611.7 475 68.0
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.2e-172 610.5 471 67.3
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.5e-172 610.1 468 68.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.6e-172 609.4 479 69.5
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 5.8e-172 608.2 481 66.5
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.3e-171 607.1 467 68.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 2.9e-171 605.9 478 66.9
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.9e-171 605.1 475 67.4
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 6.4e-171 604.7 481 66.9
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 8.4e-171 604.4 481 65.7
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.4e-170 603.6 470 68.5
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.9e-170 603.2 470 68.1
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.4e-170 602.8 472 67.4
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.2e-170 602.4 470 67.4
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 4.2e-170 602.1 475 66.9
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.2e-170 602.1 490 65.7
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.3e-170 600.9 475 66.7
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.3e-170 600.9 472 67.2
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 3.5e-169 599.0 473 67.2
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 3.5e-169 599.0 481 65.9
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.0e-169 598.2 472 66.9
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 3.0e-168 595.9 481 64.9
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 5.1e-168 595.1 472 67.6
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 6.6e-168 594.7 479 65.3
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 8.7e-168 594.3 469 68.0
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 8.7e-168 594.3 481 66.5
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.1e-167 594.0 481 64.9
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.9e-167 593.2 475 66.1
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.5e-167 592.8 476 66.0
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.5e-167 592.8 471 66.5
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.6e-166 590.1 474 66.5
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.8e-166 589.3 478 66.3
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.1e-165 585.9 474 65.0
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 9.0e-165 584.3 471 66.7
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.0e-164 583.2 482 63.3
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 7.6e-164 581.3 463 66.1
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.7e-163 580.1 471 64.5
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 2.2e-163 579.7 477 63.7
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 3.8e-163 578.9 477 65.2
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 4.9e-163 578.6 472 65.5
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 6.4e-163 578.2 472 64.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.4e-162 577.0 472 65.5
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 3.2e-162 575.9 466 65.0
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.2e-162 575.9 471 64.5
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 3.2e-162 575.9 485 64.3
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 5.4e-162 575.1 466 65.7
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 7.1e-162 574.7 474 64.3
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 9.3e-162 574.3 452 66.6
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.2e-161 573.9 471 63.7
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 2.1e-161 573.2 471 64.1
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 6.0e-161 571.6 471 65.0
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.3e-160 569.7 366 79.5
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.5e-159 567.0 474 63.3
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 9.6e-159 564.3 479 63.9
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 9.6e-159 564.3 479 63.7
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 2.8e-158 562.8 479 63.5
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 4.0e-157 558.9 473 62.4
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 4.0e-157 558.9 446 66.1
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 6.9e-157 558.1 474 62.4
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 3.4e-156 555.8 556 57.4
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 4.5e-156 555.4 459 63.6
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.5e-156 555.4 367 74.9
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 9.9e-156 554.3 468 62.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.2e-154 549.3 484 62.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 3.2e-154 549.3 462 63.9
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 5.5e-154 548.5 472 64.0
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 6.0e-153 545.0 471 62.2
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.9e-152 542.3 519 58.8
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 5.1e-152 542.0 467 62.7
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 6.7e-152 541.6 489 59.1
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 6.7e-152 541.6 462 64.3
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 8.7e-152 541.2 495 58.8
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.1e-151 540.8 460 62.2
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.1e-151 540.8 469 63.1
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.5e-151 540.4 471 62.2
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.9e-151 540.0 461 61.8
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.3e-150 537.3 472 60.8
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.6e-150 537.0 471 61.1
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.8e-150 536.2 471 61.1
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.8e-150 536.2 467 62.1
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.7e-150 535.8 364 73.1
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 4.8e-150 535.4 462 62.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 4.8e-150 535.4 434 65.2
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 6.2e-150 535.0 473 61.3
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.1e-149 534.3 479 62.0
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.1e-149 534.3 458 60.3
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 3.1e-149 532.7 460 61.5
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 6.9e-149 531.6 470 59.8
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.5e-148 530.4 477 62.1
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 2.0e-148 530.0 459 61.7
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.6e-148 529.6 364 71.4
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 3.4e-148 529.3 460 62.2
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 3.4e-148 529.3 460 62.2
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 5.8e-148 528.5 473 60.9
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 5.8e-148 528.5 464 59.7
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.3e-147 527.3 459 61.2
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.9e-147 526.2 449 63.5
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 9.7e-143 511.1 381 67.2
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 6.9e-141 505.0 480 58.8
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 3.6e-137 492.7 439 61.7
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.6e-137 492.7 364 69.2
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 5.1e-136 488.8 241 100.0
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.5e-135 487.3 488 58.2
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.9e-130 470.3 438 60.0
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 9.4e-130 468.0 495 53.3
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 9.4e-130 468.0 424 61.3
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.6e-129 466.1 478 53.8
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 2.6e-127 459.9 472 57.0
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 2.8e-126 456.4 473 53.9
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.5e-122 443.4 472 53.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 7.5e-111 405.2 460 48.3
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.5e-107 392.1 319 66.5
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 9.4e-106 388.3 531 43.9
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-103 380.9 478 50.2
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.8e-87 325.9 458 45.2
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.0e-84 315.8 275 64.7
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 6.8e-80 302.4 457 41.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 5.8e-79 299.3 257 58.8
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-78 298.1 244 66.8
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.1e-77 295.0 342 46.8
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.4e-77 293.9 180 77.8
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 8.6e-75 285.4 288 55.6
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 4.0e-64 250.0 453 36.6
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.2e-60 238.4 494 34.6
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.1e-60 237.7 468 36.1
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.6e-59 232.6 173 68.2
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.3e-58 229.2 302 47.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 7.6e-55 219.2 444 36.0
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.5e-52 210.3 214 51.4
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 2.3e-51 207.6 276 47.5
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 6.2e-49 199.5 205 49.8
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.6e-47 194.1 207 51.7
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 5.6e-42 176.4 182 54.4
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 2.1e-41 174.5 124 65.3
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.4e-38 162.9 170 52.4
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.0e-36 156.4 96 72.9
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.9e-36 156.0 96 75.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.9e-36 156.0 96 75.0
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 9.6e-34 149.1 92 78.3
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.8e-32 144.8 331 32.9
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 1.8e-32 144.8 92 69.6
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 4.5e-31 140.2 101 63.4
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.2e-30 137.9 76 80.3
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 9.3e-29 132.5 67 95.5
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 2.3e-27 127.9 129 48.8
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 8.2e-25 119.4 125 56.8
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 2.0e-18 98.2 58 79.3
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.2e-14 84.7 63 71.4
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 7.2e-13 79.7 64 70.3
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.4e-11 75.5 51 74.5
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.8e-11 75.1 46 80.4
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 3.3e-10 70.9 66 56.1
vmacro11217 Vaccinium macrocarpon HOM05D004406 ORTHO05D426987 3.1e-08 64.3 94 44.7


User provided reference genes

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