Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 3.6e-79 298.5 187 100.0
vmacro12024 Vaccinium macrocarpon HOM05D041616 ORTHO05D005062 1.1e-40 170.6 143 77.6
vmacro08443 Vaccinium macrocarpon HOM05D041616 ORTHO05D005062 5.9e-34 148.3 145 73.1
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 1.3e-12 77.4 147 46.3
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 2.2e-12 76.6 145 46.9
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 7.8e-10 68.2 98 58.2
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.7e-09 67.0 152 45.4
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 2.3e-09 66.6 99 50.5
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 3.0e-09 66.2 144 40.3
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 3.0e-09 66.2 110 55.5
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.9e-09 65.9 76 71.1
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 3.9e-09 65.9 144 41.7
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 3.9e-09 65.9 146 45.9
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 5.1e-09 65.5 151 45.0
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 8.6e-09 64.7 103 50.5
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.5e-08 63.9 144 40.3
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.5e-08 63.9 100 58.0
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 2.5e-08 63.2 76 60.5
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 2.5e-08 63.2 74 70.3
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.5e-08 63.2 97 51.5
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 2.5e-08 63.2 97 60.8
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 4.3e-08 62.4 97 51.5
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 4.3e-08 62.4 98 51.0
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 4.3e-08 62.4 98 51.0
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 5.6e-08 62.0 98 60.2
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 5.6e-08 62.0 123 46.3
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 7.3e-08 61.6 89 51.7
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 7.3e-08 61.6 89 51.7
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 7.3e-08 61.6 110 56.4
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 9.6e-08 61.2 138 45.7
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 9.6e-08 61.2 152 44.1
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 9.6e-08 61.2 92 58.7
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 9.6e-08 61.2 127 48.8
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.1e-07 60.1 149 42.3
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.1e-07 60.1 97 50.5
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.1e-07 60.1 100 59.0
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.6e-07 59.3 98 54.1
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.6e-07 59.3 98 54.1
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 3.6e-07 59.3 135 41.5
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 6.2e-07 58.5 120 45.0
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 8.1e-07 58.2 112 53.6
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.4e-06 57.4 96 59.4
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.4e-06 57.4 99 58.6
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.8e-06 57.0 98 53.1
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.8e-06 57.0 126 50.0
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.8e-06 57.0 103 56.3
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 2.4e-06 56.6 86 57.0
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.4e-06 56.6 104 49.0
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 2.4e-06 56.6 107 50.5
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 2.4e-06 56.6 100 57.0
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 3.1e-06 56.2 105 48.6
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.1e-06 56.2 74 63.5
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 3.1e-06 56.2 99 51.5
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.1e-06 56.2 154 39.6
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 3.1e-06 56.2 96 58.3
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 4.0e-06 55.8 128 46.9
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 4.0e-06 55.8 97 57.7
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 5.2e-06 55.5 115 51.3
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 5.2e-06 55.5 127 48.0
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 6.8e-06 55.1 124 49.2
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 6.8e-06 55.1 94 58.5
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 8.9e-06 54.7 104 54.8


User provided reference genes

Program Settings