Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 2.3e-290 1001.5 503 100.0
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.1e-249 866.3 504 89.7
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 4.6e-222 774.6 507 79.5
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 2.1e-211 739.2 512 76.4
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.7e-208 728.4 512 74.6
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.9e-204 716.1 506 76.1
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 2.1e-203 712.6 517 72.7
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 2.1e-203 712.6 515 72.8
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 4.7e-203 711.4 515 72.8
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.1e-202 710.3 515 72.8
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.1e-202 710.3 520 71.5
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 3.1e-202 708.8 511 74.0
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 9.9e-201 703.7 517 71.8
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 2.9e-200 702.2 518 73.0
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 3.8e-200 701.8 507 73.2
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 2.4e-199 699.1 516 72.9
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 5.4e-199 698.0 512 73.0
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.7e-198 695.7 517 72.1
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 6.0e-198 694.5 520 71.9
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.3e-197 693.3 511 74.0
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.0e-197 692.2 523 72.1
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.1e-196 690.3 512 71.5
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 3.3e-196 688.7 515 71.1
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.3e-196 688.3 523 70.2
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.6e-195 686.4 504 74.6
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.6e-195 686.4 511 72.0
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 8.1e-195 684.1 515 71.5
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.8e-194 682.9 523 71.1
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 3.1e-194 682.2 521 69.3
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 4.4e-193 678.3 536 69.8
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 3.8e-192 675.2 524 69.1
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 3.8e-192 675.2 513 71.2
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 6.4e-192 674.5 510 70.4
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 6.4e-192 674.5 519 70.9
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 2.4e-191 672.5 518 70.8
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 9.3e-191 670.6 524 69.8
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.6e-190 669.8 518 70.1
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.6e-190 669.8 518 70.7
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 2.7e-190 669.1 519 70.5
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 4.6e-190 668.3 503 70.2
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 4.6e-190 668.3 517 69.2
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 7.8e-190 667.5 520 70.4
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.0e-189 667.2 521 69.3
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.3e-189 666.0 511 70.1
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 8.7e-189 664.1 513 70.8
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.1e-188 663.7 509 70.3
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 6.9e-186 654.4 513 70.2
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 9.0e-186 654.1 512 69.1
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.2e-185 653.7 509 69.2
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 2.0e-185 652.9 520 69.0
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 2.6e-185 652.5 467 72.4
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 5.8e-185 651.4 519 67.8
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 5.8e-185 651.4 525 68.6
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 5.8e-185 651.4 509 69.2
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 1.7e-184 649.8 520 68.8
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 3.2e-183 645.6 512 68.6
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 2.7e-182 642.5 525 67.2
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 6.0e-182 641.3 512 68.4
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.0e-181 640.6 508 70.3
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.0e-181 640.6 511 67.9
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 3.9e-181 638.6 518 67.8
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 6.7e-181 637.9 521 66.8
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 2.5e-180 636.0 524 66.4
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 3.3e-180 635.6 518 68.1
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 3.3e-180 635.6 518 67.2
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 5.6e-180 634.8 518 67.4
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 2.1e-179 632.9 511 67.9
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 2.1e-179 632.9 525 66.1
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 2.8e-179 632.5 526 66.2
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 4.8e-179 631.7 521 66.2
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 8.1e-179 630.9 511 66.7
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.4e-178 630.2 455 73.6
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 2.4e-178 629.4 461 70.5
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 5.3e-178 628.2 515 67.4
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 3.4e-177 625.5 527 64.9
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 5.8e-177 624.8 516 64.5
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 9.9e-177 624.0 525 65.0
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 1.9e-175 619.8 515 66.6
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.4e-175 619.4 514 66.9
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 4.2e-175 618.6 510 66.3
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.2e-175 618.6 515 66.6
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 7.1e-175 617.8 513 66.1
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.2e-174 617.1 515 66.4
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 3.5e-174 615.5 513 66.1
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.3e-173 613.6 507 65.5
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 3.9e-173 612.1 511 65.9
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 5.1e-173 611.7 516 64.9
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.8e-170 603.2 519 64.9
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.2e-169 600.5 491 65.6
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 2.6e-169 599.4 525 63.2
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 2.9e-168 595.9 514 64.6
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 7.1e-167 591.3 515 63.5
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.5e-166 589.0 507 64.5
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 3.9e-165 585.5 536 61.9
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 3.7e-163 578.9 507 63.7
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 4.8e-163 578.6 509 63.5
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.4e-162 576.2 536 61.4
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.5e-161 573.5 511 63.2
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 5.5e-159 565.1 500 63.0
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 7.2e-159 564.7 502 63.1
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 9.3e-159 564.3 500 63.2
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 1.6e-158 563.5 502 62.9
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 4.6e-158 562.0 528 61.2
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 6.7e-157 558.1 504 61.9
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 5.1e-149 531.9 524 58.2
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 6.1e-142 508.4 536 54.5
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 6.1e-142 508.4 513 57.5
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 5.2e-141 505.4 475 60.8
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 1.1e-140 504.2 517 57.3
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 3.7e-139 499.2 516 56.4
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 3.3e-132 476.1 507 56.4
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 3.6e-126 456.1 527 52.2
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 4.8e-123 445.7 543 49.5
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 5.4e-122 442.2 306 72.5
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 6.5e-120 435.3 507 51.5
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 2.3e-117 426.8 518 49.4
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 4.0e-101 372.9 503 48.7
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 1.9e-95 354.0 570 40.9
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.6e-89 334.3 300 65.3
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 5.1e-64 249.6 287 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 3.9e-56 223.4 335 44.5
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.4e-50 204.9 203 59.6
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 3.3e-39 167.2 276 40.9
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 1.5e-23 115.2 97 66.0
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 5.7e-23 113.2 524 27.9
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.3e-22 112.1 516 26.7
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.2e-19 101.3 105 55.2
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 5.5e-18 96.7 81 65.4
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.7e-14 85.1 57 70.2
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.7e-12 77.8 62 61.3
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.3e-11 75.5 81 56.8
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.5e-11 73.2 54 63.0
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 3.0e-08 64.3 525 23.6


User provided reference genes

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