Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 0.0e+00 1478.8 770 100.0
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 3.0e-305 1051.6 714 79.3
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 3.4e-277 958.4 724 73.2
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 6.4e-268 927.5 752 69.5
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 3.8e-260 901.7 753 67.2
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 7.4e-240 834.3 728 65.5
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 1.5e-227 793.5 717 61.5
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 9.4e-227 790.8 761 59.8
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 3.6e-226 788.9 730 60.7
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 5.2e-225 785.0 740 58.4
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 2.6e-224 782.7 729 59.5
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.7e-223 780.0 755 58.9
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 2.8e-223 779.2 706 61.9
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 6.3e-223 778.1 734 59.8
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.3e-220 770.4 760 57.9
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.3e-220 770.4 718 61.1
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.9e-219 766.5 772 57.8
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 1.9e-219 766.5 732 59.6
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.2e-219 765.4 755 56.7
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.1e-218 761.5 715 60.8
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 8.8e-217 757.7 714 59.8
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.5e-216 754.6 715 60.3
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.4e-214 750.4 716 58.4
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 7.0e-214 748.0 728 58.8
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 5.9e-213 745.0 716 59.6
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 3.2e-211 739.2 727 58.5
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 8.0e-210 734.6 725 57.4
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.8e-209 733.4 733 56.2
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 2.0e-208 729.9 734 57.6
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 7.5e-208 728.0 726 57.9
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.7e-207 726.9 755 55.6
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.7e-207 726.9 755 55.1
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 8.3e-207 724.5 764 55.0
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.4e-206 723.8 705 60.4
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 2.4e-206 723.0 753 55.8
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 3.1e-206 722.6 754 55.8
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 9.1e-206 721.1 726 55.9
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 2.7e-205 719.5 755 56.4
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 3.5e-205 719.2 755 55.2
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 7.7e-205 718.0 756 56.6
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 3.8e-204 715.7 756 55.2
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 3.8e-204 715.7 747 54.9
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 3.3e-203 712.6 753 55.1
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 7.2e-203 711.4 733 55.4
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 9.5e-203 711.1 757 53.6
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 6.8e-201 704.9 738 56.4
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.5e-200 703.7 755 53.5
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.6e-200 703.0 756 54.5
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 7.5e-200 701.4 758 53.4
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 4.9e-199 698.7 739 53.6
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 2.4e-198 696.4 755 55.0
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 4.1e-198 695.7 749 54.6
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 5.4e-198 695.3 720 54.7
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 5.4e-198 695.3 720 54.7
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 7.0e-198 694.9 730 54.7
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 9.2e-198 694.5 712 54.5
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 2.0e-197 693.3 757 52.6
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 2.0e-197 693.3 759 53.8
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 2.0e-197 693.3 771 53.3
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 3.5e-197 692.6 729 53.5
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 4.6e-197 692.2 720 54.6
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 4.6e-197 692.2 720 54.6
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 2.3e-196 689.9 757 52.0
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 3.9e-196 689.1 711 54.3
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.1e-195 687.6 755 55.5
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.5e-195 687.2 759 52.3
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.6e-194 683.7 757 52.6
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 4.7e-194 682.2 757 52.0
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 4.7e-194 682.2 728 53.3
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 8.0e-194 681.4 754 51.2
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 8.9e-193 677.9 755 51.4
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 2.0e-192 676.8 721 53.4
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 2.0e-192 676.8 713 53.3
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 4.4e-192 675.6 756 52.6
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.3e-191 674.1 530 68.7
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.2e-191 673.3 757 51.8
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 4.1e-190 669.1 755 52.8
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 9.2e-190 667.9 721 52.8
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 1.6e-189 667.2 758 51.5
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.8e-185 653.7 718 53.6
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 4.1e-182 642.5 736 50.3
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 4.6e-181 639.0 686 54.2
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 8.1e-178 628.2 764 49.6
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.1e-177 627.9 758 50.0
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 3.0e-172 609.8 575 57.7
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 6.6e-172 608.6 575 58.8
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.1e-169 601.3 530 62.8
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 4.0e-169 599.4 728 50.0
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.9e-167 593.2 735 48.6
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.2e-165 587.8 745 45.9
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.3e-164 584.3 548 59.3
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.7e-164 583.9 708 50.0
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 2.8e-162 576.6 732 47.7
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 6.2e-162 575.5 540 59.6
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 8.1e-162 575.1 723 48.3
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 4.0e-161 572.8 539 59.2
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.7e-159 567.4 567 57.8
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 3.9e-156 556.2 587 53.7
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 7.3e-155 552.0 533 57.0
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 9.6e-155 551.6 615 53.0
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 8.7e-148 528.5 444 66.9
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 8.7e-148 528.5 637 47.6
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 3.3e-147 526.6 504 58.9
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.8e-146 523.5 502 61.0
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 4.3e-139 499.6 728 46.0
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 8.7e-132 475.3 725 43.3
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 4.2e-126 456.4 509 52.1
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.7e-120 435.6 507 50.5
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 7.2e-118 429.1 618 44.2
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.4e-116 424.9 768 36.2
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 9.4e-110 402.1 332 63.0
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.2e-109 401.7 429 51.0
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 9.8e-99 365.5 325 60.6
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.2e-91 342.0 275 66.5
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 5.4e-89 333.2 275 63.6
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 5.9e-88 329.7 282 62.1
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 1.9e-86 324.7 572 40.9
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.8e-84 318.2 206 79.6
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 2.0e-83 314.7 483 44.7
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 4.4e-83 313.5 503 40.8
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 6.4e-82 309.7 218 71.1
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.7e-80 304.3 783 29.1
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.4e-73 282.0 177 77.4
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 2.0e-72 278.1 272 58.8
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 3.5e-72 277.3 339 46.9
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.1e-65 255.8 224 60.3
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 4.6e-64 250.4 715 28.5
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.4e-60 238.8 617 29.5
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 2.4e-44 184.9 267 46.4
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 7.6e-43 179.9 368 32.1
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.6e-40 172.2 231 44.6
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 6.4e-34 150.2 157 52.9
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.5e-33 147.1 160 51.9
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.1e-33 146.7 160 51.9
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 5.8e-27 127.1 244 36.9
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 1.6e-24 119.0 88 67.0
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 7.4e-22 110.2 178 42.1
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-20 106.3 76 69.7
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.6e-19 100.1 218 36.2
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.0e-18 99.8 125 53.6
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.0e-15 88.2 185 35.7
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-12 79.3 105 38.1
Nn5g29172 Nelumbo nucifera HOM05D004734 ORTHO05D272015 3.2e-09 68.2 67 47.8
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 5.1e-07 60.8 117 35.9
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 1.1e-06 59.7 59 67.8
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 4.4e-06 57.8 37 73.0
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 5.7e-06 57.4 97 30.9
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 9.7e-06 56.6 37 70.3


User provided reference genes

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