Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 1.7e-111 406.0 203 100.0
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 2.9e-74 282.3 202 72.3
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.9e-70 269.6 199 68.8
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 3.3e-70 268.9 199 68.8
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 8.9e-68 260.8 202 65.3
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 7.1e-65 251.1 197 66.0
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 9.2e-65 250.8 197 66.0
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 1.3e-63 246.9 177 70.6
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 8.6e-63 244.2 192 66.1
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 1.5e-62 243.4 201 63.2
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 5.6e-62 241.5 197 64.0
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 2.8e-61 239.2 189 60.3
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 6.2e-61 238.0 190 62.6
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 4.0e-60 235.3 192 63.5
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 8.9e-60 234.2 196 65.3
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 2.1e-56 223.0 213 53.1
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 3.5e-56 222.2 164 69.5
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 2.3e-55 219.5 201 55.2
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 3.0e-55 219.2 213 55.4
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 6.6e-55 218.0 199 57.8
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 6.6e-55 218.0 203 56.2
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 5.6e-54 214.9 213 51.6
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 7.3e-54 214.5 215 54.4
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 7.3e-54 214.5 219 60.7
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 9.6e-54 214.2 213 54.0
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 2.1e-53 213.0 213 55.9
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 4.8e-53 211.8 182 59.9
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 6.2e-53 211.5 203 52.7
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 6.2e-53 211.5 199 53.3
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.1e-52 210.7 160 62.5
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 1.1e-52 210.7 197 53.8
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.4e-52 210.3 191 57.6
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.4e-52 210.3 213 54.9
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 2.4e-52 209.5 214 54.7
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 3.1e-52 209.1 202 52.5
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 9.0e-52 207.6 213 50.2
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 9.0e-52 207.6 197 54.3
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 1.5e-51 206.8 219 50.2
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 1.5e-51 206.8 214 49.1
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 2.0e-51 206.5 167 62.3
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 2.6e-51 206.1 167 63.5
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 3.4e-51 205.7 197 59.4
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 4.4e-51 205.3 197 55.3
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 4.4e-51 205.3 200 54.5
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 7.6e-51 204.5 201 52.2
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 9.9e-51 204.1 210 53.3
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.8e-50 202.2 201 56.7
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 8.4e-50 201.1 148 64.9
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 1.1e-49 200.7 210 51.4
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 9.3e-49 197.6 213 47.4
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 9.3e-49 197.6 213 47.4
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.2e-48 197.2 167 58.7
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-48 196.4 176 55.1
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 2.7e-48 196.1 206 47.1
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 7.9e-48 194.5 206 47.1
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.0e-47 194.1 206 47.6
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 1.7e-47 193.4 206 54.4
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.0e-47 192.6 203 47.3
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 3.0e-47 192.6 209 51.2
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 3.9e-47 192.2 210 50.0
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 5.1e-47 191.8 174 55.7
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 5.1e-47 191.8 205 54.6
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 6.6e-47 191.4 202 50.0
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 1.1e-46 190.7 226 46.5
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 1.9e-46 189.9 167 58.1
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 2.5e-46 189.5 186 54.3
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 3.6e-45 185.7 183 53.0
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 6.2e-45 184.9 203 50.7
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 8.1e-45 184.5 196 49.0
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.4e-44 183.7 208 49.5
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 1.8e-44 183.3 173 55.5
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 2.4e-44 183.0 222 46.4
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.4e-44 183.0 157 58.0
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.4e-44 183.0 157 58.0
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 4.0e-44 182.2 203 50.2
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 9.0e-44 181.0 173 56.1
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 1.2e-43 180.6 173 56.1
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 7.6e-43 177.9 196 46.9
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.7e-42 176.8 199 49.7
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 2.9e-42 176.0 202 47.5
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 1.1e-41 174.1 202 47.5
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 1.4e-41 173.7 186 48.9
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 7.1e-41 171.4 197 47.2
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 3.5e-40 169.1 174 48.3
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 4.6e-40 168.7 134 67.2
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 6.0e-40 168.3 201 45.8
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 7.9e-40 167.9 202 45.5
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 1.3e-39 167.2 211 43.1
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.8e-39 166.8 202 45.0
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 8.7e-39 164.5 210 41.9
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 2.5e-38 162.9 191 45.0
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 5.6e-38 161.8 194 50.5
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 1.3e-37 160.6 177 46.3
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 2.8e-37 159.5 176 46.6
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 7.9e-32 141.4 117 57.3
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 7.4e-30 134.8 110 59.1
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 9.6e-30 134.4 135 51.1
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 1.6e-29 133.7 117 57.3
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 2.8e-29 132.9 165 46.1
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 4.8e-29 132.1 133 51.1
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 1.1e-28 131.0 213 38.5
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 1.8e-28 130.2 135 50.4
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 6.9e-28 128.3 136 52.2
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 2.9e-26 122.9 203 36.9
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 3.8e-26 122.5 97 61.9
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 3.8e-26 122.5 189 38.6
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.9e-25 120.2 77 77.9
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 5.5e-25 118.6 109 53.2
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 2.1e-24 116.7 139 46.0
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 2.7e-24 116.3 109 51.4
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.0e-23 114.4 109 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 5.7e-22 108.6 117 47.9
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 1.3e-21 107.5 83 62.7
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 3.7e-21 105.9 113 53.1
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 2.4e-20 103.2 94 53.2
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 3.2e-17 92.8 120 43.3
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 7.2e-17 91.7 102 46.1
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 1.6e-16 90.5 132 39.4
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 1.6e-16 90.5 132 39.4
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 6.7e-15 85.1 98 45.9
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.8e-12 77.0 62 59.7
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 3.4e-11 72.8 52 61.5
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 2.2e-10 70.1 108 38.0
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 2.2e-10 70.1 108 38.9
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 3.8e-10 69.3 98 41.8
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 6.5e-10 68.6 79 44.3
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 7.9e-08 61.6 55 54.5
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 1.4e-07 60.8 69 44.9
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 1.5e-06 57.4 118 31.4
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 1.5e-06 57.4 118 31.4


User provided reference genes

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