Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 0.0e+00 1106.7 562 100.0
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.9e-311 1071.6 562 93.2
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 3.5e-295 1017.7 561 88.4
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.1e-292 1008.4 563 92.7
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 5.2e-275 950.7 569 80.5
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 5.7e-266 920.6 567 78.5
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 3.2e-264 914.8 564 78.5
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.6e-252 875.9 474 91.6
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 2.6e-250 868.6 564 73.2
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 2.2e-249 865.5 564 73.0
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 2.2e-249 865.5 566 73.7
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.6e-247 859.4 565 73.1
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 1.6e-247 859.4 564 72.7
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 4.6e-247 857.8 565 73.1
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 6.0e-247 857.4 561 73.6
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 1.0e-246 856.7 563 73.0
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 2.3e-246 855.5 565 72.9
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 4.3e-245 851.3 561 72.9
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 3.6e-244 848.2 560 72.0
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 4.7e-244 847.8 570 72.5
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.5e-242 842.8 568 70.6
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 2.0e-242 842.4 567 71.1
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 5.8e-242 840.9 568 70.8
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 4.9e-241 837.8 565 70.8
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 1.4e-240 836.3 523 76.9
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 4.6e-239 831.2 565 70.8
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 7.8e-239 830.5 565 70.3
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 2.3e-238 828.9 565 69.7
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 1.1e-237 826.6 521 75.8
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 2.5e-237 825.5 565 70.3
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 6.2e-236 820.8 564 71.1
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 1.1e-235 820.1 563 69.6
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 2.4e-235 818.9 563 70.3
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 2.0e-234 815.8 566 69.1
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.4e-234 814.7 619 64.8
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 1.7e-233 812.8 563 69.1
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 2.2e-233 812.4 601 66.1
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 1.1e-232 810.1 584 67.5
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 2.4e-232 808.9 526 72.6
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 1.6e-231 806.2 562 68.5
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 3.0e-230 802.0 557 70.2
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 4.8e-228 794.7 562 68.5
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 4.0e-227 791.6 569 67.3
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.8e-226 787.7 559 67.4
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 1.7e-225 786.2 562 66.5
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 3.8e-225 785.0 562 67.3
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 7.8e-223 777.3 565 66.2
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 2.3e-222 775.8 565 66.0
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 5.1e-222 774.6 559 65.8
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 8.7e-222 773.9 559 66.0
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 1.9e-221 772.7 560 65.7
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 2.5e-221 772.3 559 65.8
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 2.5e-221 772.3 559 65.1
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.6e-220 769.6 520 71.7
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 1.4e-219 766.5 520 71.9
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 5.3e-219 764.6 503 71.0
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 9.0e-219 763.8 552 68.1
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 1.2e-218 763.5 560 66.4
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 4.5e-218 761.5 523 68.5
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 9.9e-218 760.4 559 64.9
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 3.8e-217 758.4 574 66.9
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 1.4e-216 756.5 523 67.7
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 4.2e-216 755.0 521 69.5
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 7.1e-216 754.2 559 65.5
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 3.3e-213 745.3 564 64.4
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 1.3e-212 743.4 569 63.1
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 3.7e-212 741.9 522 67.4
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 1.4e-211 740.0 566 63.8
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 1.2e-210 736.9 566 63.6
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.2e-210 736.9 564 64.2
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 6.0e-207 724.5 560 63.0
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 4.8e-204 714.9 562 62.8
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 8.2e-204 714.1 590 62.4
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 3.1e-203 712.2 559 63.1
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 1.7e-201 706.4 534 65.4
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 5.7e-197 691.4 560 60.0
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 1.7e-193 679.9 457 72.0
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 3.2e-192 675.6 460 70.4
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 1.8e-187 659.8 492 65.9
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 4.1e-187 658.7 457 69.6
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 1.3e-180 637.1 677 51.4
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.2e-178 630.6 524 61.5
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 4.5e-178 628.6 563 55.8
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 2.9e-177 625.9 524 61.3
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 4.2e-176 622.1 593 55.1
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 3.6e-175 619.0 560 57.0
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 4.1e-171 605.5 480 62.7
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 8.5e-169 597.8 523 56.6
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 5.2e-166 588.6 584 52.1
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 1.1e-147 527.7 403 63.5
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 2.1e-122 443.7 300 68.3
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 4.7e-119 432.6 313 65.5
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 2.6e-117 426.8 315 64.4
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 3.4e-117 426.4 319 66.1
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.1e-112 411.4 263 70.0
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 1.1e-112 411.4 342 59.1
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 2.5e-112 410.2 711 36.7
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 2.2e-108 397.1 596 38.6
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.0e-105 388.3 259 68.3
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 1.5e-96 357.8 259 67.6
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 8.1e-95 352.1 583 34.6
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 3.5e-90 336.7 249 66.3
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 5.1e-89 332.8 267 61.4
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 3.4e-85 320.1 272 58.8
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 3.7e-71 273.5 244 53.3
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 6.3e-71 272.7 204 63.2
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 1.5e-69 268.1 193 62.7
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 5.2e-65 253.1 205 62.0
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 7.2e-59 232.6 165 66.7
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 9.4e-59 232.3 140 74.3
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 1.4e-57 228.4 310 41.3
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 1.5e-56 224.9 165 69.7
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 3.2e-51 207.2 185 55.7
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 8.8e-49 199.1 170 60.0
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 1.5e-40 171.8 167 53.9
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.4e-38 165.2 143 58.0
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 7.5e-32 142.9 94 68.1
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 3.3e-27 127.5 148 49.3
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 2.0e-24 118.2 85 68.2
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 4.4e-16 90.5 116 43.1
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 7.8e-13 79.7 85 50.6
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 1.3e-12 79.0 45 75.6
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 2.3e-12 78.2 64 59.4
Rhsim04G0034300 Rhododendron simsii HOM05D001260 ORTHO05D004134 7.3e-11 73.2 38 94.7
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 1.2e-08 65.9 42 69.0


User provided reference genes

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