Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.7e-55 218.4 109 100.0
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.2e-47 193.0 103 90.3
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.2e-47 193.0 105 89.5
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.6e-47 191.4 109 86.2
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 8.0e-47 190.3 109 86.2
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.4e-46 189.5 107 86.0
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.8e-46 189.1 109 85.3
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 5.2e-46 187.6 103 87.4
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.7e-46 187.2 108 83.3
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 6.7e-46 187.2 107 85.0
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 1.1e-45 186.4 108 83.3
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.5e-45 186.0 107 83.2
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.5e-45 186.0 109 81.7
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 2.6e-45 185.3 107 84.1
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 4.4e-45 184.5 108 82.4
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 4.4e-45 184.5 109 83.5
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 5.7e-45 184.1 108 81.5
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 9.7e-45 183.3 104 85.6
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.3e-44 183.0 102 86.3
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.2e-44 182.2 107 84.1
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.2e-44 182.2 107 84.1
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 4.8e-44 181.0 105 84.8
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 6.3e-44 180.6 107 81.3
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 6.3e-44 180.6 104 82.7
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 81.3
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 84.1
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 84.1
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 107 81.3
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.8e-43 179.1 105 85.7
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.8e-43 179.1 104 83.7
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.8e-43 179.1 100 86.0
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.8e-43 179.1 108 83.3
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 2.4e-43 178.7 99 86.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 2.4e-43 178.7 100 86.0
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 3.1e-43 178.3 100 86.0
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 4.1e-43 177.9 104 83.7
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 4.1e-43 177.9 104 83.7
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.3e-43 177.6 105 82.9
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 9.1e-43 176.8 109 78.9
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 9.1e-43 176.8 105 81.9
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 9.1e-43 176.8 107 81.3
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.2e-42 176.4 109 78.9
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.2e-42 176.4 109 78.9
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.2e-42 176.4 109 78.9
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.2e-42 176.4 109 78.9
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-42 176.4 104 82.7
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-42 176.4 104 82.7
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.2e-42 176.4 100 84.0
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.2e-42 176.4 109 78.9
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.6e-42 176.0 107 79.4
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.6e-42 176.0 109 79.8
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 2.6e-42 175.3 109 78.0
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 3.5e-42 174.9 99 84.8
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 5.9e-42 174.1 105 81.0
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 5.9e-42 174.1 104 80.8
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 7.7e-42 173.7 108 79.6
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.7e-42 173.7 105 80.0
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.3e-41 172.9 102 81.4
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.3e-41 172.9 109 78.9
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.7e-41 172.6 103 80.6
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.2e-41 172.2 100 84.0
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 2.2e-41 172.2 104 79.8
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 5.0e-41 171.0 105 79.0
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 5.0e-41 171.0 109 77.1
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.0e-41 171.0 105 79.0
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 5.0e-41 171.0 107 80.4
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 6.5e-41 170.6 103 78.6
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 6.5e-41 170.6 99 82.8
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 6.5e-41 170.6 107 78.5
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 6.5e-41 170.6 105 78.1
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.5e-40 169.5 105 78.1
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.9e-40 169.1 100 81.0
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.9e-40 169.1 109 78.9
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 2.5e-40 168.7 107 78.5
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.2e-40 168.3 109 76.1
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 3.2e-40 168.3 107 77.6
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 4.2e-40 167.9 109 76.1
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 4.2e-40 167.9 109 76.1
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 4.2e-40 167.9 105 79.0
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 4.2e-40 167.9 103 78.6
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 5.5e-40 167.5 104 76.9
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 9.4e-40 166.8 102 82.4
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.2e-39 166.4 105 77.1
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.6e-39 166.0 108 75.0
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.6e-39 166.0 104 76.0
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 1.6e-39 166.0 105 77.1
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 2.1e-39 165.6 103 76.7
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 2.7e-39 165.2 107 76.6
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.7e-39 165.2 109 75.2
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 3.6e-39 164.9 100 78.0
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 3.6e-39 164.9 96 82.3
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 3.6e-39 164.9 107 74.8
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 3.6e-39 164.9 105 76.2
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 4.7e-39 164.5 105 76.2
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 4.7e-39 164.5 108 74.1
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 6.1e-39 164.1 98 83.7
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 8.0e-39 163.7 111 73.0
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.0e-38 163.3 104 75.0
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.4e-38 162.9 98 77.6
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.8e-38 162.5 109 72.5
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.8e-38 162.5 101 78.2
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.8e-38 162.5 106 77.4
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.3e-38 162.2 98 83.7
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 3.0e-38 161.8 98 77.6
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 6.7e-38 160.6 98 78.6
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.0e-37 159.1 107 72.9
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 4.4e-37 157.9 107 74.8
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 2.8e-36 155.2 109 68.8
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.7e-36 154.8 95 82.1
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 6.3e-36 154.1 105 70.5
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 4.1e-35 151.4 98 76.5
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.6e-34 149.4 109 72.5
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 3.5e-34 148.3 107 65.4
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 3.5e-34 148.3 106 68.9
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 5.9e-34 147.5 106 67.0
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 64.5
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.0e-33 146.7 98 72.4
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.3e-33 146.4 106 66.0
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.7e-33 146.0 94 80.9
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 2.2e-33 145.6 105 66.7
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 2.9e-33 145.2 107 65.4
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 8.5e-33 143.7 106 64.2
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 8.5e-33 143.7 106 64.2
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 2.5e-32 142.1 107 64.5
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 3.2e-32 141.7 106 64.2
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 4.2e-32 141.4 98 66.3
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.2e-31 139.8 107 62.6
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 1.6e-31 139.4 107 61.7
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 2.1e-31 139.0 107 63.6
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 2.1e-31 139.0 107 63.6
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 2.1e-31 139.0 107 63.6
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 2.1e-31 139.0 107 63.6
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 3.6e-31 138.3 106 63.2
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 5.2e-30 134.4 99 65.7
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 2.0e-29 132.5 99 66.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 5.7e-29 131.0 86 75.6
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 2.8e-28 128.6 107 63.6
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.4e-27 126.3 66 90.9
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.8e-27 125.9 103 62.1
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 4.1e-27 124.8 81 70.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.2e-26 123.2 98 59.2
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.5e-24 116.3 83 65.1
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 3.3e-24 115.2 83 65.1
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.3e-24 115.2 65 83.1
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 3.6e-23 111.7 75 76.0
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 8.0e-23 110.5 90 62.2
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.0e-22 108.6 86 64.0
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 2.6e-21 105.5 79 67.1
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 3.7e-20 101.7 87 57.5
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 4.1e-19 98.2 97 55.7
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 1.2e-18 96.7 56 80.4
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 8.6e-17 90.5 76 63.2
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 1.1e-16 90.1 58 75.9
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.1e-16 90.1 86 53.5
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.5e-16 89.7 55 81.8
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 4.3e-16 88.2 57 78.9
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.4e-14 83.2 58 74.1
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 8.3e-12 73.9 109 41.3
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 2.0e-10 69.3 46 76.1
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 3.5e-10 68.6 85 45.9
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 6.2e-07 57.8 96 40.6


User provided reference genes

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