Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 9.0e-173 610.1 305 100.0
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.8e-125 453.0 334 74.6
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 6.2e-105 384.8 334 64.4
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.6e-92 343.6 238 77.7
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.6e-92 343.6 238 77.7
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.0e-75 287.7 245 64.9
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.9e-69 266.9 336 49.7
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 1.1e-58 231.1 334 44.9
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 3.4e-55 219.5 243 53.5
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.3e-54 217.6 334 41.9
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.9e-45 187.2 334 37.1
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 2.5e-45 186.8 324 38.0
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 8.7e-43 178.3 324 37.0
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.3e-38 164.5 245 42.9
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 5.0e-38 162.5 157 55.4
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.6e-34 150.2 175 54.9
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 3.7e-33 146.4 336 33.9
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 4.1e-32 142.9 343 30.6
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 2.0e-31 140.6 337 32.9
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.0e-30 138.3 263 36.9
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.7e-30 137.5 252 36.5
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 2.5e-29 133.7 327 30.9
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 4.2e-29 132.9 335 31.6
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.7e-28 130.2 353 29.7
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 6.1e-28 129.0 374 30.2
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 8.0e-28 128.6 267 37.1
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.3e-27 127.1 353 30.9
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 5.2e-27 125.9 356 33.1
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 5.2e-27 125.9 356 29.8
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 8.8e-27 125.2 336 32.4
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.0e-26 124.0 247 36.4
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 2.6e-26 123.6 243 33.7
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.6e-26 123.6 373 29.5
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 9.7e-26 121.7 232 36.2
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.7e-25 120.9 373 29.0
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 9.1e-24 115.2 325 30.8
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.2e-23 114.8 417 26.9
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.6e-23 113.6 358 30.2
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.5e-23 113.2 387 29.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 7.7e-23 112.1 338 29.3
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 7.7e-23 112.1 189 37.6
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 2.9e-22 110.2 232 34.9
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.0e-22 109.4 189 37.6
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 8.5e-22 108.6 189 37.6
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.5e-21 107.8 244 35.7
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.2e-21 106.7 385 27.3
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.4e-21 105.1 163 39.9
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.2e-20 104.8 158 41.8
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.6e-20 104.4 160 40.6
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.6e-20 104.4 337 28.2
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 2.1e-20 104.0 339 27.4
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 2.1e-20 104.0 333 29.1
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 4.7e-20 102.8 427 27.2
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 8.0e-20 102.1 415 26.5
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.4e-19 101.3 244 34.4
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.4e-19 101.3 378 28.3
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.8e-19 100.9 414 25.8
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.8e-19 100.9 294 30.6
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 1.8e-19 100.9 244 34.8
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 2.3e-19 100.5 348 27.3
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 5.2e-19 99.4 261 30.7
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 6.7e-19 99.0 283 29.0
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 6.7e-19 99.0 218 35.3
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.5e-18 97.8 346 27.7
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 7.5e-18 95.5 145 45.5
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 7.5e-18 95.5 145 45.5
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 7.5e-18 95.5 164 42.1
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 7.5e-18 95.5 277 32.9
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 9.7e-18 95.1 161 42.2
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 9.7e-18 95.1 277 32.9
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.3e-17 94.7 145 45.5
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.2e-17 94.0 266 32.3
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 8.2e-17 92.0 161 41.0
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 8.2e-17 92.0 145 42.1
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.4e-16 91.3 164 39.6
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.4e-16 91.3 164 39.6
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.8e-16 90.9 244 31.1
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.4e-16 90.5 244 33.6
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 9.1e-16 88.6 335 28.7
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 9.1e-16 88.6 224 31.7
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.2e-15 88.2 146 43.2
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 5.9e-15 85.9 227 33.9
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 7.7e-15 85.5 164 40.2
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.7e-14 84.3 262 30.9
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 2.2e-14 84.0 248 32.3
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 3.8e-14 83.2 337 28.2
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 5.0e-14 82.8 165 41.2
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 5.0e-14 82.8 285 28.4
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.5e-13 81.3 313 27.5
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.9e-13 80.9 175 38.9
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 3.2e-13 80.1 326 25.8
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 3.2e-13 80.1 155 39.4
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 3.2e-13 80.1 155 39.4
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 5.5e-13 79.3 161 37.9
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 5.5e-13 79.3 161 37.9
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 5.5e-13 79.3 161 38.5
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.2e-12 78.2 293 30.0
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.2e-12 78.2 311 29.9
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 3.6e-12 76.6 161 36.6
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 3.6e-12 76.6 322 28.3
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 1.0e-11 75.1 261 31.0
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.8e-11 74.3 111 44.1
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 4.8e-09 66.2 248 28.2
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 4.8e-09 66.2 319 23.5
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.1e-08 65.1 244 30.7
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 3.1e-08 63.5 299 26.4
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 5.4e-08 62.8 175 35.4
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.6e-07 61.2 166 36.1
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.6e-07 61.2 319 21.3
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 2.7e-07 60.5 323 23.5
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.8e-06 56.6 194 29.9
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 5.0e-06 56.2 102 42.2


User provided reference genes

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