Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 6.6e-157 557.4 289 100.0
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 6.6e-157 557.4 289 100.0
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 9.6e-124 447.2 369 70.2
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 9.6e-100 367.5 368 60.1
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.5e-92 343.6 238 77.7
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 4.1e-66 255.8 368 46.7
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 5.9e-57 225.3 363 41.9
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.0e-56 224.6 251 54.2
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.5e-55 219.9 369 40.9
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 8.9e-45 184.9 362 38.7
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 7.3e-39 165.2 368 34.8
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 8.0e-38 161.8 373 34.3
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 3.1e-37 159.8 288 39.6
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 5.0e-32 142.5 287 39.7
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.5e-31 141.0 371 32.9
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.2e-30 137.9 277 36.5
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 3.1e-29 133.3 365 32.1
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 3.2e-26 123.2 366 31.7
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.0e-24 118.2 457 27.4
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 5.1e-24 115.9 391 28.4
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 1.6e-22 110.9 381 29.1
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 8.1e-22 108.6 366 30.1
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 5.2e-21 105.9 379 29.6
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 7.6e-20 102.1 248 32.3
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.9e-18 97.4 264 31.8
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 3.2e-18 96.7 238 30.7
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 3.2e-18 96.7 275 31.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 7.1e-18 95.5 438 26.3
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 9.2e-18 95.1 274 32.1
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 6.0e-17 92.4 283 31.1
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.0e-16 91.7 222 35.1
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 1.3e-16 91.3 300 28.7
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.3e-16 91.3 305 29.5
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.7e-16 90.9 308 28.9
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.3e-16 90.5 307 29.0
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 3.0e-16 90.1 433 23.3
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 3.0e-16 90.1 308 28.9
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 5.1e-16 89.4 374 27.3
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 8.6e-16 88.6 300 28.0
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.5e-15 87.8 369 29.5
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.5e-15 87.0 429 24.5
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 5.6e-15 85.9 393 27.5
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 5.6e-15 85.9 366 26.2
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 5.6e-15 85.9 431 23.2
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 7.3e-15 85.5 381 26.5
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 9.6e-15 85.1 237 30.4
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.2e-14 84.7 358 26.5
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.6e-14 84.3 269 29.0
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 2.1e-14 84.0 358 26.3
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.1e-14 84.0 236 31.4
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 2.1e-14 84.0 429 23.3
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 2.4e-13 80.5 345 25.2
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.0e-13 79.7 138 38.4
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 6.8e-13 79.0 138 39.1
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.2e-12 78.2 138 38.4
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 2.0e-12 77.4 138 38.4
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 3.4e-12 76.6 238 30.7
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.4e-12 76.3 183 32.8
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 1.3e-11 74.7 368 28.0
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 1.7e-11 74.3 221 34.8
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 4.9e-11 72.8 206 35.0
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 8.4e-11 72.0 366 25.4
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.1e-10 71.6 139 38.8
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.4e-10 70.5 206 34.5
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 2.4e-10 70.5 224 29.9
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 2.4e-10 70.5 238 28.2
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 2.4e-10 70.5 240 29.6
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 4.2e-10 69.7 221 33.9
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 4.2e-10 69.7 231 31.2
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 5.4e-10 69.3 493 23.3
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 7.1e-10 68.9 206 34.0
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 9.3e-10 68.6 278 25.5
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.2e-09 68.2 282 27.3
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.6e-09 67.8 284 28.5
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.7e-09 67.0 284 28.2
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 4.6e-09 66.2 427 25.3
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 4.6e-09 66.2 132 37.9
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 4.6e-09 66.2 235 29.8
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 7.8e-09 65.5 163 35.0
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 7.8e-09 65.5 209 33.0
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 1.0e-08 65.1 150 36.7
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.0e-08 65.1 218 31.2
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.3e-08 64.7 145 33.8
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.7e-08 64.3 376 27.1
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 2.3e-08 63.9 195 32.8
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 3.9e-08 63.2 163 36.8
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 5.1e-08 62.8 232 28.4
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.1e-08 62.8 179 32.4
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.5e-07 61.2 264 28.4
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 1.9e-07 60.8 134 36.6
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.9e-07 60.8 134 36.6
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 1.9e-07 60.8 171 29.8
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 4.3e-07 59.7 190 32.6
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.3e-06 58.2 238 28.2
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-06 58.2 296 25.7
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 2.1e-06 57.4 272 25.4
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 2.8e-06 57.0 146 34.2
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 3.6e-06 56.6 119 37.0
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 3.6e-06 56.6 198 31.8
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 3.6e-06 56.6 268 25.7
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 3.6e-06 56.6 262 26.7
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.8e-06 56.2 161 29.8
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.8e-06 56.2 161 29.8
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 4.8e-06 56.2 146 34.2
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 4.8e-06 56.2 171 32.7
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 4.8e-06 56.2 171 32.7
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.8e-06 56.2 370 23.2
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 4.8e-06 56.2 195 29.2


User provided reference genes

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