Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 3.8e-228 794.7 455 100.0
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 1.4e-142 510.4 502 67.3
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 3.1e-84 316.6 487 47.4
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 2.4e-81 307.0 480 44.6
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 1.7e-74 284.3 478 42.9
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 3.0e-71 273.5 482 42.1
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 1.9e-62 244.2 472 39.0
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 2.8e-53 213.8 334 44.0
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 8.2e-53 212.2 481 35.6
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 6.5e-50 202.6 485 34.6
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 1.0e-47 195.3 487 36.1
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 1.8e-47 194.5 480 35.4
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 3.3e-46 190.3 460 34.3
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 2.2e-45 187.6 490 34.1
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 3.7e-45 186.8 484 33.3
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 1.4e-44 184.9 487 32.6
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 1.4e-44 184.9 370 38.9
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 4.1e-44 183.3 481 32.8
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 9.0e-44 182.2 476 35.5
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 3.8e-42 176.8 449 37.0
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 1.6e-40 171.4 483 31.5
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 1.8e-39 167.9 471 32.3
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 3.0e-39 167.2 499 37.1
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 3.0e-39 167.2 573 29.5
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 2.0e-38 164.5 479 31.3
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 2.0e-38 164.5 487 32.0
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 2.2e-37 161.0 483 31.9
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 2.2e-37 161.0 485 32.6
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 6.3e-37 159.5 458 31.9
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 8.2e-37 159.1 508 31.9
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 1.1e-36 158.7 468 32.7
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 1.1e-36 158.7 479 31.5
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 3.1e-36 157.1 471 32.5
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 5.3e-36 156.4 133 60.9
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 9.1e-36 155.6 473 32.6
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 9.1e-36 155.6 510 29.8
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 1.5e-35 154.8 486 32.9
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 1.5e-35 154.8 479 31.7
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 3.4e-35 153.7 485 32.4
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 4.5e-35 153.3 487 34.1
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 4.5e-35 153.3 471 31.8
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 2.9e-34 150.6 483 35.0
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 6.5e-34 149.4 512 30.3
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 1.4e-33 148.3 507 30.6
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 1.4e-33 148.3 472 31.6
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.9e-33 147.9 314 36.6
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 3.2e-33 147.1 508 30.1
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 4.2e-33 146.7 489 35.0
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 9.4e-33 145.6 431 30.9
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 1.8e-31 141.4 477 29.6
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 1.8e-31 141.4 477 30.2
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.3e-31 141.0 422 30.6
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 6.7e-31 139.4 494 30.0
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 6.7e-31 139.4 474 31.4
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 1.1e-30 138.7 342 33.6
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 1.5e-30 138.3 319 36.1
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 2.6e-30 137.5 453 34.9
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.4e-30 136.7 424 29.7
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 7.4e-30 136.0 450 30.0
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 9.7e-30 135.6 492 33.1
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 3.7e-29 133.7 481 29.7
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 6.3e-29 132.9 354 34.5
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 5.3e-28 129.8 479 28.2
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 5.9e-27 126.3 477 29.8
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.9e-26 124.0 469 28.4
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 3.8e-26 123.6 374 31.6
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 6.5e-26 122.9 479 27.8
TAR626G1271 Trochodendron aralioides HOM05D005864 ORTHO05D006770 6.5e-26 122.9 175 46.9
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 8.5e-26 122.5 333 33.3
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 2.5e-25 120.9 535 26.4
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 2.1e-24 117.9 498 28.3
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 8.0e-24 115.9 362 33.7
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 1.0e-23 115.5 457 32.4
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 1.4e-23 115.2 495 27.7
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 1.8e-23 114.8 362 32.0
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 3.9e-23 113.6 480 27.1
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 6.7e-23 112.8 481 27.0
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 1.1e-22 112.1 379 28.2
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 3.3e-22 110.5 476 29.2
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.2e-21 107.8 315 31.7
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 2.2e-21 107.8 336 31.0
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-21 107.5 518 25.5
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 3.7e-21 107.1 444 27.9
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 4.8e-21 106.7 361 31.9
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 1.6e-19 101.7 349 34.4
TAR626G0200 Trochodendron aralioides HOM05D005864 ORTHO05D006770 4.5e-19 100.1 198 40.9
CSS0011199 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 7.7e-19 99.4 100 63.0
CSS0018090 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 2.2e-18 97.8 69 72.5
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 2.2e-18 97.8 336 31.0
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 4.7e-16 90.1 541 23.1
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 4.0e-15 87.0 197 33.0
CDE05G1677 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 1.8e-12 78.2 42 81.0
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 1.8e-12 78.2 431 26.0
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 2.7e-11 74.3 345 27.2
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 4.5e-11 73.6 462 22.9
Mapoly0099s0053 Marchantia polymorpha HOM05D005864 ORTHO05D006770 4.5e-11 73.6 212 34.9
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 4.5e-11 73.6 468 23.7
TAR375G0046 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.0e-10 72.4 46 69.6
TAR372G0002 Trochodendron aralioides HOM05D005864 ORTHO05D006770 2.2e-10 71.2 46 69.6
RcHm_v2.0_Chr2g0160061 Rosa chinensis HOM05D005864 ORTHO05D006770 2.9e-10 70.9 161 36.6
TAR353G0003 Trochodendron aralioides HOM05D005864 ORTHO05D006770 5.5e-09 66.6 43 69.8
FAN09G4739 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.6e-08 65.1 38 71.1
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 1.0e-07 62.4 468 24.8
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 1.0e-07 62.4 465 24.3
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 2.3e-07 61.2 322 25.8
Oeu035505.1 Olea europaea HOM05D005864 ORTHO05D006770 2.3e-07 61.2 80 43.8
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 4.0e-07 60.5 327 25.7
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 5.2e-07 60.1 193 29.5
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 5.2e-07 60.1 193 28.5
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 1.5e-06 58.5 193 29.0
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 1.5e-06 58.5 364 22.5
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 3.4e-06 57.4 409 23.7
Pp3c11_20880 Physcomitrium patens HOM05D005864 ORTHO05D006770 3.4e-06 57.4 34 70.6
SMO356G0193 Selaginella moellendorffii HOM05D005864 ORTHO05D006770 3.4e-06 57.4 193 29.0
SEGI_09449 Sequoiadendron giganteum HOM05D005864 ORTHO05D006770 5.7e-06 56.6 457 24.7
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 9.8e-06 55.8 339 23.0
Hund01249 Selenicereus undatus HOM05D005864 ORTHO05D006770 9.8e-06 55.8 75 46.7


User provided reference genes

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