Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 8.5e-174 613.6 317 100.0
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 2.8e-124 449.1 325 78.8
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.1e-120 435.3 322 73.6
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.5e-119 432.2 324 74.1
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 3.3e-117 425.6 320 73.1
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.5e-114 416.8 325 71.4
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 4.4e-114 415.2 325 71.1
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 6.4e-113 411.4 320 71.9
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 8.3e-113 411.0 319 72.1
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.1e-112 410.6 318 70.8
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.9e-112 409.8 323 68.4
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 2.4e-112 409.5 326 69.3
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.6e-111 406.8 323 68.4
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 2.7e-111 406.0 325 69.2
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 7.8e-111 404.4 325 69.8
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.0e-110 404.1 325 69.2
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.0e-110 402.5 325 68.9
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.3e-109 399.1 325 66.5
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 3.3e-109 399.1 317 69.1
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 2.1e-108 396.4 321 69.8
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 6.8e-107 391.3 323 67.5
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.5e-106 390.2 318 67.6
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.4e-106 389.0 318 67.6
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.4e-106 389.0 318 67.6
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 4.4e-106 388.7 318 66.4
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 4.4e-106 388.7 322 67.1
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 5.8e-106 388.3 324 67.9
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 5.8e-106 388.3 323 66.9
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.3e-105 387.1 334 64.7
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 2.9e-105 386.0 318 67.3
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 3.8e-105 385.6 322 67.4
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 3.8e-105 385.6 323 65.6
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 4.9e-105 385.2 318 67.3
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 8.4e-105 384.4 321 64.2
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 1.1e-104 384.0 354 62.7
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.1e-104 384.0 317 67.2
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 2.4e-104 382.9 324 65.1
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 3.2e-104 382.5 324 65.4
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 5.4e-104 381.7 317 66.9
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 5.4e-104 381.7 325 67.1
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 7.1e-104 381.3 324 66.0
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 9.2e-104 380.9 318 66.7
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.6e-103 380.2 318 65.4
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 2.7e-103 379.4 322 64.3
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 2.7e-103 379.4 317 67.2
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 4.6e-103 378.6 319 65.5
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 6.0e-103 378.3 326 66.0
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 6.0e-103 378.3 324 66.0
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 6.0e-103 378.3 313 67.4
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.8e-103 377.9 318 67.0
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.8e-103 377.9 318 67.0
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 7.8e-103 377.9 321 64.2
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 7.8e-103 377.9 264 73.9
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.3e-102 377.1 317 67.2
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-102 376.7 318 66.4
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 1.7e-102 376.7 356 61.0
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 1.7e-102 376.7 314 64.6
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 2.3e-102 376.3 319 65.2
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 2.3e-102 376.3 321 64.2
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 2.3e-102 376.3 317 65.6
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 3.9e-102 375.6 321 66.7
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 3.9e-102 375.6 318 64.8
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 5.1e-102 375.2 321 64.5
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 8.6e-102 374.4 320 65.3
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 1.1e-101 374.0 317 65.3
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 1.1e-101 374.0 321 65.1
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 1.1e-101 374.0 322 64.6
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.5e-101 373.6 313 64.5
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 1.5e-101 373.6 314 66.6
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 1.9e-101 373.2 347 62.8
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 2.5e-101 372.9 315 64.4
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.3e-101 372.5 317 65.0
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 4.3e-101 372.1 336 62.8
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 7.3e-101 371.3 311 66.6
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 7.3e-101 371.3 312 67.6
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 9.6e-101 370.9 320 65.0
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.2e-100 370.5 300 68.0
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.2e-100 370.5 300 68.0
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.2e-100 370.5 340 63.5
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.6e-100 370.2 309 66.3
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 3.6e-100 369.0 314 65.9
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 4.7e-100 368.6 312 65.1
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 6.2e-100 368.2 329 63.2
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 6.2e-100 368.2 320 62.8
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 8.1e-100 367.9 318 65.1
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.4e-99 367.1 321 62.6
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 1.8e-99 366.7 313 64.9
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 2.4e-99 366.3 322 62.1
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 2.4e-99 366.3 322 62.4
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 3.1e-99 365.9 313 66.8
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 4.0e-99 365.5 320 62.8
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 5.2e-99 365.2 314 64.6
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 5.2e-99 365.2 314 64.6
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 5.2e-99 365.2 317 64.4
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 1.5e-98 363.6 284 68.0
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.0e-98 363.2 312 67.0
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 5.8e-98 361.7 316 64.2
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 7.6e-98 361.3 314 65.3
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.3e-97 360.5 312 63.8
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.3e-97 360.5 317 64.4
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.7e-97 360.1 316 63.9
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.7e-97 360.1 316 63.9
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 2.2e-97 359.8 316 63.3
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 2.9e-97 359.4 358 57.3
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 4.9e-97 358.6 313 63.6
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 8.4e-97 357.8 311 63.3
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 8.4e-97 357.8 308 65.9
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 2.1e-95 353.2 319 62.1
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 7.8e-95 351.3 300 64.0
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 3.0e-94 349.4 318 62.9
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 5.1e-94 348.6 257 70.8
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 6.6e-94 348.2 326 61.3
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 6.6e-94 348.2 340 59.1
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.5e-93 347.1 315 61.0
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.5e-93 347.1 313 61.0
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 9.6e-93 344.4 318 59.1
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 2.4e-91 339.7 310 61.6
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 2.6e-90 336.3 291 63.9
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 5.8e-90 335.1 331 58.9
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.3e-89 334.0 318 59.1
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 2.9e-89 332.8 318 62.3
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 5.4e-88 328.6 315 59.7
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 9.3e-88 327.8 255 67.8
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 1.0e-86 324.3 325 59.4
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.5e-85 319.7 253 66.4
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 3.6e-84 315.8 258 67.4
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 9.0e-83 311.2 225 72.9
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 9.0e-83 311.2 291 59.5
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.1e-77 294.3 318 56.6
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 4.3e-77 292.4 246 64.2
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.8e-75 287.0 229 68.1
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.4e-75 286.6 283 55.1
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.5e-74 283.9 239 61.1
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.5e-74 283.9 227 64.3
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 3.4e-74 282.7 226 67.3
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.0e-73 281.2 228 65.8
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 1.7e-73 280.4 321 52.3
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.5e-72 276.6 263 55.9
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 4.2e-72 275.8 216 67.6
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.3e-70 270.8 230 63.5
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.9e-64 250.4 185 71.4
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 3.7e-60 236.1 196 62.8
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 3.3e-53 213.0 262 44.7
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.4e-51 207.6 242 46.3
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.2e-49 200.3 180 59.4
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 7.9e-47 191.8 150 64.7
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 3.7e-44 183.0 242 45.0
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 1.8e-35 154.1 243 37.9
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.8e-35 154.1 161 54.0
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.2e-23 114.8 68 83.8
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.5e-21 107.8 76 75.0
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 4.4e-21 106.3 152 46.1
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 3.8e-17 93.2 85 62.4
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 2.5e-16 90.5 119 49.6
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 8.9e-14 82.0 138 42.0
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.6e-10 71.2 48 68.8


User provided reference genes

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