Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0148800 Rhododendron simsii HOM05D006722 ORTHO05D007944 3.1e-59 231.9 140 100.0
Rhsim06G0148700 Rhododendron simsii HOM05D006722 ORTHO05D007944 8.9e-51 203.8 140 79.3
CSS0017413 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 5.5e-24 114.8 142 47.9
CSS0036536 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 7.1e-24 114.4 129 61.2
CSS0029289 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 6.0e-23 111.3 141 48.9
Actinidia09877 Actinidia chinensis HOM05D006722 ORTHO05D007944 1.9e-21 106.3 145 50.3
Lj8C115G8 Lonicera japonica HOM05D000389 ORTHO05D000287 9.6e-21 104.0 123 45.5
Oeu029925.1 Olea europaea HOM05D006722 ORTHO05D007944 5.8e-18 94.7 133 44.4
Oeu029927.1 Olea europaea HOM05D006722 ORTHO05D007944 1.9e-16 89.7 127 43.3
Atru.chr6.3036 Acer truncatum HOM05D006722 ORTHO05D007944 2.5e-16 89.4 140 42.1
Cc05_g06730 Coffea canephora HOM05D006722 ORTHO05D007944 5.5e-16 88.2 134 51.5
Rhsim04G0066600 Rhododendron simsii HOM05D006722 ORTHO05D007944 1.6e-15 86.7 126 45.2
Lalb_Chr14g0366741 Lupinus albus HOM05D006722 ORTHO05D007944 2.1e-15 86.3 139 40.3
HanXRQChr10g0289571 Helianthus annuus HOM05D006722 ORTHO05D007944 2.7e-15 85.9 133 39.8
MD17G1079900 Malus domestica HOM05D006722 ORTHO05D007944 4.6e-15 85.1 140 48.6
Lj3g0012520 Lotus japonicus HOM05D006722 ORTHO05D007944 1.0e-14 84.0 129 48.8
TAR141G0004 Trochodendron aralioides HOM05D006722 ORTHO05D007944 1.3e-14 83.6 161 42.9
Ciclev10017219m.g Citrus clementina HOM05D006722 ORTHO05D007944 1.8e-14 83.2 138 37.0
Medtr4g037480 Medicago truncatula HOM05D006722 ORTHO05D007944 1.8e-14 83.2 121 43.8
Actinidia11069 Actinidia chinensis HOM05D006722 ORTHO05D007944 3.0e-14 82.4 90 48.9
Hma1.2p1_0875F.1_g231440 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 3.9e-14 82.0 134 40.3
Peaxi162Scf00132g00074 Petunia axillaris HOM05D006722 ORTHO05D007944 8.7e-14 80.9 137 39.4
FAN14G5843 Fragaria x ananassa HOM05D006722 ORTHO05D007944 1.1e-13 80.5 123 42.3
Prupe.3G234900 Prunus persica HOM05D006722 ORTHO05D007944 1.1e-13 80.5 144 36.8
DCAR_006245 Daucus carota HOM05D006722 ORTHO05D007944 1.9e-13 79.7 122 39.3
RcHm_v2.0_Chr2g0162351 Rosa chinensis HOM05D006722 ORTHO05D007944 1.9e-13 79.7 128 51.6
Thecc.02G175500 Theobroma cacao HOM05D006722 ORTHO05D007944 2.5e-13 79.3 143 37.8
TWI36G1477 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 2.5e-13 79.3 132 38.6
CANSAT64G0061 Cannabis sativa HOM05D006722 ORTHO05D007944 3.3e-13 79.0 143 38.5
Medtr4g037560 Medicago truncatula HOM05D006722 ORTHO05D007944 3.3e-13 79.0 141 48.2
Solyc07g054310.3 Solanum lycopersicum HOM05D006722 ORTHO05D007944 4.3e-13 78.6 114 42.1
TWI75G0677 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 4.3e-13 78.6 141 39.7
Sopen07g028260 Solanum pennellii HOM05D006722 ORTHO05D007944 5.7e-13 78.2 114 42.1
HanXRQChr17g0559971 Helianthus annuus HOM05D006722 ORTHO05D007944 9.6e-13 77.4 131 37.4
ATR0693G370 Amborella trichopoda HOM05D041462 ORTHO05D007944 2.8e-12 75.9 128 41.4
Glyma.06G296300 Glycine max HOM05D006722 ORTHO05D007944 2.8e-12 75.9 133 50.4
PGSC0003DMG400018315 Solanum tuberosum HOM05D006722 ORTHO05D007944 2.8e-12 75.9 118 51.7
Duzib132G0356 Durio zibethinus HOM05D006722 ORTHO05D007944 3.7e-12 75.5 143 39.2
Lj3g0001103 Lotus japonicus HOM05D006722 ORTHO05D007944 3.7e-12 75.5 128 37.5
Glyma.13G299400 Glycine max HOM05D006722 ORTHO05D007944 4.8e-12 75.1 130 41.5
DCAR_023670 Daucus carota HOM05D006722 ORTHO05D007944 6.3e-12 74.7 124 40.3
Lsat_1_v5_gn_3_39421 Lactuca sativa HOM05D006722 ORTHO05D007944 6.3e-12 74.7 114 40.4
DCAR_006246 Daucus carota HOM05D006722 ORTHO05D007944 1.8e-11 73.2 122 36.9
FAN02G2988 Fragaria x ananassa HOM05D006722 ORTHO05D007944 1.8e-11 73.2 118 40.7
VMungo1080G0484 Vigna mungo HOM05D006722 ORTHO05D007944 2.4e-11 72.8 144 49.3
MSTRG.14198 Avicennia marina HOM05D006722 ORTHO05D007944 4.1e-11 72.0 138 39.1
MBI02_g19252_MAGBIO Magnolia biondii HOM05D006722 ORTHO05D007944 5.3e-11 71.6 68 52.9
Migut.H01052 Erythranthe guttata HOM05D006722 ORTHO05D007944 6.9e-11 71.2 141 37.6
Migut.H01051 Erythranthe guttata HOM05D006722 ORTHO05D007944 1.2e-10 70.5 132 40.2
Phvul.011G113200 Phaseolus vulgaris HOM05D006722 ORTHO05D007944 1.2e-10 70.5 152 42.1
AT2G20870 Arabidopsis thaliana HOM05D006722 ORTHO05D007944 1.5e-10 70.1 133 34.6
Duzib052G0119 Durio zibethinus HOM05D006722 ORTHO05D007944 1.5e-10 70.1 145 35.9
Duzib052G0455 Durio zibethinus HOM05D006722 ORTHO05D007944 1.5e-10 70.1 145 35.9
Eucgr.A01793 Eucalyptus grandis HOM05D006722 ORTHO05D007944 2.0e-10 69.7 137 35.0
Carub.0003s3553 Capsella rubella HOM05D006722 ORTHO05D007944 2.6e-10 69.3 130 36.2
Migut.H01053 Erythranthe guttata HOM05D006722 ORTHO05D007944 2.6e-10 69.3 131 36.6
BcaB08g34945 Brassica carinata HOM05D006722 ORTHO05D007944 4.5e-10 68.6 118 37.3
Lsat_1_v5_gn_4_70120 Lactuca sativa HOM05D006722 ORTHO05D007944 5.9e-10 68.2 149 35.6
THA.LOC104824711 Tarenaya hassleriana HOM05D006722 ORTHO05D007944 5.9e-10 68.2 138 36.2
Thhalv10002109m.g Eutrema salsugineum HOM05D006722 ORTHO05D007944 7.6e-10 67.8 119 35.3
Medtr2g090185 Medicago truncatula HOM05D006722 ORTHO05D007944 1.0e-09 67.4 134 35.8
BcaC07g41191 Brassica carinata HOM05D006722 ORTHO05D007944 1.7e-09 66.6 118 35.6
C08p41970 Brassica napus HOM05D006722 ORTHO05D007944 1.7e-09 66.6 118 35.6
BolC8t51760H Brassica oleracea HOM05D006722 ORTHO05D007944 1.7e-09 66.6 118 35.6
Ca_05301_v3 Cicer arietinum L. HOM05D006722 ORTHO05D007944 1.7e-09 66.6 141 43.3
Aa31LG8G17780 Aethionema arabicum HOM05D006722 ORTHO05D007944 2.2e-09 66.2 138 34.8
A09p58680 Brassica napus HOM05D006722 ORTHO05D007944 2.2e-09 66.2 118 35.6
BraA09t41254Z Brassica rapa HOM05D006722 ORTHO05D007944 2.9e-09 65.9 118 35.6
ClCG02G017440 Citrullus lanatus HOM05D006722 ORTHO05D007944 3.8e-09 65.5 124 38.7
AL3G54120 Arabidopsis lyrata HOM05D006722 ORTHO05D007944 5.0e-09 65.1 133 33.1
Nitab4.5_0005380g0010 Nicotiana tabacum HOM05D006722 ORTHO05D007944 5.0e-09 65.1 144 34.0
ECA246G2923 Erigeron canadensis HOM05D006722 ORTHO05D007944 6.5e-09 64.7 141 33.3
Phvul.005G106200 Phaseolus vulgaris HOM05D006722 ORTHO05D007944 8.5e-09 64.3 165 44.2
PGR042G1420 Punica granatum HOM05D006722 ORTHO05D007944 1.4e-08 63.5 128 48.4
Sp3g34120 Schrenkiella parvula HOM05D006722 ORTHO05D007944 1.4e-08 63.5 130 35.4
TPR.G21773 Trifolium pratense HOM05D006722 ORTHO05D007944 1.9e-08 63.2 126 45.2
CARHR111610 Cardamine hirsuta HOM05D006722 ORTHO05D007944 2.5e-08 62.8 123 33.3
Actinidia11070 Actinidia chinensis HOM05D006722 ORTHO05D007944 3.2e-08 62.4 68 50.0
Gohir.A03G158500 Gossypium hirsutum HOM05D006722 ORTHO05D007944 3.2e-08 62.4 139 37.4
Gohir.D02G181700 Gossypium hirsutum HOM05D006722 ORTHO05D007944 3.2e-08 62.4 139 37.4
Gorai.005G204200 Gossypium raimondii HOM05D006722 ORTHO05D007944 3.2e-08 62.4 139 37.4
Gohir.D12G141200 Gossypium hirsutum HOM05D006722 ORTHO05D007944 9.3e-08 60.8 144 43.1
TPR.G35552 Trifolium pratense HOM05D006722 ORTHO05D007944 1.6e-07 60.1 128 35.9
Psat5g270720 Pisum sativum HOM05D006722 ORTHO05D007944 2.1e-07 59.7 134 38.1
Lalb_Chr19g0135361 Lupinus albus HOM05D006722 ORTHO05D007944 2.7e-07 59.3 133 33.8
COL.COLO4_35406 Corchorus olitorius HOM05D006722 ORTHO05D007944 1.0e-06 57.4 140 45.0
Actinidia01434 Actinidia chinensis HOM05D006722 ORTHO05D054353 2.3e-06 56.2 83 57.8
SalBow1G4058 Salvia bowleyana HOM05D006722 ORTHO05D007944 3.9e-06 55.5 79 45.6


User provided reference genes

Program Settings