Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0139700 Rhododendron simsii HOM05D000762 ORTHO05D002234 1.1e-145 520.0 264 100.0
Rhsim08G0135000 Rhododendron simsii HOM05D000762 ORTHO05D002234 9.3e-25 118.2 278 36.3
CSS0024439 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D002234 2.5e-22 110.2 240 34.2
Dinv28095 Davidia involucrata HOM05D000762 ORTHO05D002234 1.1e-20 104.8 232 36.2
Actinidia39828 Actinidia chinensis HOM05D000762 ORTHO05D002234 1.3e-18 97.8 246 35.4
Ciclev10020074m.g Citrus clementina HOM05D000762 ORTHO05D002234 3.2e-17 93.2 237 33.3
Cc04_g07180 Coffea canephora HOM05D000762 ORTHO05D002234 1.2e-16 91.3 243 33.3
Sc10g0007330 Simmondsia chinensis HOM05D000762 ORTHO05D002234 1.8e-15 87.4 240 31.2
Duzib068G0056 Durio zibethinus HOM05D000762 ORTHO05D002234 2.3e-15 87.0 211 34.1
Potri.012G057100 Populus trichocarpa HOM05D000762 ORTHO05D002234 6.7e-15 85.5 249 32.9
PGSC0003DMG400005718 Solanum tuberosum HOM05D000762 ORTHO05D002234 1.5e-14 84.3 218 32.6
TWI81G0888 Tripterygium wilfordii HOM05D000762 ORTHO05D002234 1.5e-14 84.3 213 31.9
Thecc.03G034400 Theobroma cacao HOM05D000762 ORTHO05D002234 2.5e-14 83.6 224 33.0
Sopen03g038400 Solanum pennellii HOM05D000762 ORTHO05D002234 5.7e-14 82.4 213 31.9
Solyc03g119570.3 Solanum lycopersicum HOM05D000762 ORTHO05D002234 9.6e-14 81.6 213 31.9
CiPaw.15G130000 Carya illinoinensis HOM05D000762 ORTHO05D002234 1.3e-13 81.3 235 31.5
MELO3C017303.2 Cucumis melo HOM05D000762 ORTHO05D002234 1.3e-13 81.3 221 31.2
Nitab4.5_0005886g0030 Nicotiana tabacum HOM05D000762 ORTHO05D002234 2.1e-13 80.5 217 31.3
vmacro17662 Vaccinium macrocarpon HOM05D000762 ORTHO05D002234 2.1e-13 80.5 297 31.0
BolC6t39837H Brassica oleracea HOM05D000762 ORTHO05D002234 2.8e-13 80.1 226 32.3
Gohir.A12G266400 Gossypium hirsutum HOM05D000762 ORTHO05D002234 4.8e-13 79.3 211 31.8
C06p48020 Brassica napus HOM05D000762 ORTHO05D002234 6.3e-13 79.0 224 32.1
CsaV3_1G003790 Cucumis sativus L. HOM05D000762 ORTHO05D002234 6.3e-13 79.0 221 30.8
Atru.chr9.834 Acer truncatum HOM05D000762 ORTHO05D002234 8.2e-13 78.6 235 32.3
Haze_18666 Corylus avellana HOM05D000762 ORTHO05D002234 8.2e-13 78.6 238 31.1
DCAR_023204 Daucus carota HOM05D000762 ORTHO05D002234 8.2e-13 78.6 220 31.4
CSS0019648 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D002234 1.1e-12 78.2 201 30.8
Nn3g17825 Nelumbo nucifera HOM05D000762 ORTHO05D002234 1.1e-12 78.2 227 30.8
A07p39730 Brassica napus HOM05D000762 ORTHO05D002234 1.4e-12 77.8 227 32.2
Migut.I00344 Erythranthe guttata HOM05D000762 ORTHO05D002234 1.4e-12 77.8 234 32.1
Gohir.D12G266800 Gossypium hirsutum HOM05D000762 ORTHO05D002234 1.8e-12 77.4 211 31.3
Gorai.008G286800 Gossypium raimondii HOM05D000762 ORTHO05D002234 1.8e-12 77.4 211 31.3
THA.LOC104798740 Tarenaya hassleriana HOM05D000762 ORTHO05D002234 1.8e-12 77.4 222 32.4
Nitab4.5_0000974g0010 Nicotiana tabacum HOM05D000762 ORTHO05D002234 2.4e-12 77.0 215 30.7
Sp5g29070 Schrenkiella parvula HOM05D000762 ORTHO05D002234 2.4e-12 77.0 228 32.0
Haze_18668 Corylus avellana HOM05D000762 ORTHO05D002234 4.1e-12 76.3 238 30.7
Prupe.5G220800 Prunus persica HOM05D000762 ORTHO05D002234 9.0e-12 75.1 210 28.1
BraA07t31522Z Brassica rapa HOM05D000762 ORTHO05D002234 1.2e-11 74.7 226 31.9
ClCG06G014860 Citrullus lanatus HOM05D000762 ORTHO05D002234 1.5e-11 74.3 220 30.5
MD06G1215600 Malus domestica HOM05D000762 ORTHO05D002234 1.5e-11 74.3 206 30.1
Sed0020661 Sechium edule HOM05D000762 ORTHO05D002234 1.5e-11 74.3 221 30.3
HanXRQChr09g0250481 Helianthus annuus HOM05D000762 ORTHO05D002234 2.0e-11 73.9 216 30.6
Glyma.09G184700 Glycine max HOM05D000762 ORTHO05D002234 2.6e-11 73.6 212 29.2
ATR0686G047 Amborella trichopoda HOM05D000762 ORTHO05D002234 3.4e-11 73.2 228 28.9
arahy.Tifrunner.gnm1.ann1.395KN8 Arachis hypogaea HOM05D000762 ORTHO05D002234 3.4e-11 73.2 212 28.3
arahy.Tifrunner.gnm1.ann1.I4V6WJ Arachis hypogaea HOM05D000762 ORTHO05D002234 3.4e-11 73.2 212 28.3
ECA233G0898 Erigeron canadensis HOM05D000762 ORTHO05D002234 3.4e-11 73.2 226 30.5
QL10p025208 Quercus lobata HOM05D000762 ORTHO05D002234 3.4e-11 73.2 216 31.5
TPR.G27935 Trifolium pratense HOM05D000762 ORTHO05D002234 3.4e-11 73.2 233 29.2
Cfa019783 Carpinus fangiana HOM05D000762 ORTHO05D002234 4.5e-11 72.8 212 30.2
Lalb_Chr24g0397751 Lupinus albus HOM05D000762 ORTHO05D002234 4.5e-11 72.8 214 29.4
Phvul.004G157500 Phaseolus vulgaris HOM05D000762 ORTHO05D002234 4.5e-11 72.8 212 28.3
CDE07G1332 Ceratophyllum demersum HOM05D000762 ORTHO05D002234 5.9e-11 72.4 234 29.5
Peaxi162Scf00015g00943 Petunia axillaris HOM05D000762 ORTHO05D002234 5.9e-11 72.4 208 30.8
PGR044G1258 Punica granatum HOM05D000762 ORTHO05D002234 5.9e-11 72.4 225 29.8
VMungo0464G0574 Vigna mungo HOM05D000762 ORTHO05D002234 5.9e-11 72.4 212 28.8
CARHR066980 Cardamine hirsuta HOM05D000762 ORTHO05D002234 7.6e-11 72.0 235 29.8
SalBow5G3324 Salvia bowleyana HOM05D000762 ORTHO05D002234 7.6e-11 72.0 130 38.5
AT1G73875 Arabidopsis thaliana HOM05D000762 ORTHO05D002234 1.0e-10 71.6 212 32.1
Thhalv10018567m.g Eutrema salsugineum HOM05D000762 ORTHO05D002234 1.0e-10 71.6 228 30.7
Medtr6g084560 Medicago truncatula HOM05D000762 ORTHO05D002234 1.0e-10 71.6 241 27.4
Aa31LG4G4190 Aethionema arabicum HOM05D000090 ORTHO05D001322 2.2e-10 70.5 221 30.3
PSO017G2716 Papaver somniferum HOM05D000762 ORTHO05D002234 2.9e-10 70.1 224 28.1
Psat1g037760 Pisum sativum HOM05D000762 ORTHO05D002234 2.9e-10 70.1 238 27.3
FAN18G0911 Fragaria x ananassa HOM05D000762 ORTHO05D002234 5.0e-10 69.3 233 27.0
Manes.01G012100 Manihot esculenta HOM05D000762 ORTHO05D002234 5.0e-10 69.3 119 38.7
Ca_25496_v3 Cicer arietinum L. HOM05D000762 ORTHO05D002234 6.5e-10 68.9 220 28.6
TAR629G0604 Trochodendron aralioides HOM05D000762 ORTHO05D002234 6.5e-10 68.9 206 28.6
Aqoxy3G00312 Aquilegia oxysepala HOM05D000762 ORTHO05D002234 1.1e-09 68.2 224 27.2
AL2G33700 Arabidopsis lyrata HOM05D000762 ORTHO05D002234 1.1e-09 68.2 211 29.9
MSTRG.11325 Avicennia marina HOM05D000762 ORTHO05D002234 1.1e-09 68.2 141 36.9
Eucgr.K02220 Eucalyptus grandis HOM05D000762 ORTHO05D002234 1.1e-09 68.2 229 28.4
Lj2g0022064 Lotus japonicus HOM05D000762 ORTHO05D002234 1.1e-09 68.2 223 27.4
RcHm_v2.0_Chr7g0185351 Rosa chinensis HOM05D000762 ORTHO05D002234 1.4e-09 67.8 210 27.6
CANSAT80G0130 Cannabis sativa HOM05D000762 ORTHO05D002234 1.9e-09 67.4 212 29.2
Carub.0002s2064 Capsella rubella HOM05D000762 ORTHO05D002234 3.2e-09 66.6 219 29.7
FvH4_5g12230 Fragaria vesca HOM05D000762 ORTHO05D002234 3.2e-09 66.6 229 27.1
FAN08G3011 Fragaria x ananassa HOM05D000762 ORTHO05D002234 3.2e-09 66.6 229 27.1
Cpa.g.sc3.518 Carica papaya HOM05D000762 ORTHO05D002234 7.2e-09 65.5 143 35.7
GSVIVG01008276001 Vitis vinifera HOM05D000762 ORTHO05D002234 7.2e-09 65.5 145 35.9
FAN04G1424 Fragaria x ananassa HOM05D000762 ORTHO05D002234 9.3e-09 65.1 229 26.2
Lsat_1_v5_gn_4_99121 Lactuca sativa HOM05D000762 ORTHO05D002234 9.3e-09 65.1 136 37.5
HPP92_004824 Vanilla planifolia HOM05D000762 ORTHO05D002234 1.6e-08 64.3 213 27.2
COL.COLO4_05975 Corchorus olitorius HOM05D000762 ORTHO05D002234 2.1e-08 63.9 144 35.4
SGA_v2.0_scaffold25G10989 Striga asiatica HOM05D000762 ORTHO05D002234 2.1e-08 63.9 245 27.3
FAN13G0552 Fragaria x ananassa HOM05D000762 ORTHO05D002234 3.6e-08 63.2 244 27.9
Pp3c10_2300 Physcomitrium patens HOM05D000762 ORTHO05D002234 1.0e-07 61.6 210 27.6
Sabra12G0042500 Salix brachista HOM05D000762 ORTHO05D002234 3.0e-07 60.1 167 34.1
Pp3c1_25240 Physcomitrium patens HOM05D000762 ORTHO05D002234 1.5e-06 57.8 214 25.7
BcaB06g25894 Brassica carinata HOM05D000762 ORTHO05D002234 2.5e-06 57.0 116 33.6
Lsat_1_v5_gn_9_81600 Lactuca sativa HOM05D001292 ORTHO05D001202 3.3e-06 56.6 142 33.8
GSVIVG01008252001 Vitis vinifera HOM05D000762 ORTHO05D002234 3.3e-06 56.6 204 27.0
Nn4g23757 Nelumbo nucifera HOM05D000762 ORTHO05D002234 4.3e-06 56.2 211 27.0
PGR044G2604 Punica granatum HOM05D000762 ORTHO05D002234 4.3e-06 56.2 210 28.1
Aqoxy3G00350 Aquilegia oxysepala HOM05D000762 ORTHO05D002234 5.7e-06 55.8 209 30.1
Sp3g16590 Schrenkiella parvula HOM05D000762 ORTHO05D002234 5.7e-06 55.8 112 34.8
A05p31130 Brassica napus HOM05D000762 ORTHO05D002234 9.7e-06 55.1 116 32.8
BraA05t21955Z Brassica rapa HOM05D000762 ORTHO05D002234 9.7e-06 55.1 116 32.8
Lj5A148T44 Lonicera japonica HOM05D000762 ORTHO05D002234 9.7e-06 55.1 148 35.1
Solyc03g119710.4 Solanum lycopersicum HOM05D000762 ORTHO05D002234 9.7e-06 55.1 139 32.4


User provided reference genes

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