Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.7e-209 731.5 416 100.0
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.3e-187 659.1 420 93.1
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.2e-105 386.7 428 61.0
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.4e-99 366.7 450 59.3
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 9.9e-98 361.3 448 58.3
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.1e-83 312.8 442 47.7
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.9e-80 303.9 450 52.7
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.6e-79 299.7 428 49.1
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 3.7e-76 289.7 462 44.2
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.2e-74 284.6 432 44.4
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 6.5e-73 278.9 455 43.3
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 3.6e-71 273.1 452 45.8
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 6.1e-71 272.3 434 44.2
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.8e-70 270.8 448 42.9
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 2.3e-70 270.4 431 46.9
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 3.9e-70 269.6 435 45.1
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.0e-69 267.3 427 42.9
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 7.4e-69 265.4 438 47.3
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 7.4e-69 265.4 436 45.9
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.2e-68 261.9 442 41.2
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.8e-67 260.8 441 45.1
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 2.4e-67 260.4 425 43.5
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 2.4e-67 260.4 437 43.2
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 4.1e-67 259.6 434 42.4
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 5.3e-67 259.2 427 42.4
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 1.2e-66 258.1 182 78.0
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.5e-66 257.7 445 42.2
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 3.4e-66 256.5 450 41.1
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 1.0e-65 255.0 439 42.8
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.7e-65 254.2 443 42.7
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 6.5e-65 252.3 445 41.8
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.1e-64 251.5 426 44.4
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 3.2e-64 250.0 429 41.5
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 5.5e-64 249.2 222 60.8
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 7.2e-64 248.8 447 43.6
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.2e-63 248.1 433 43.2
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 4.7e-63 246.1 444 40.8
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.0e-62 245.0 424 43.4
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.0e-62 245.0 435 42.8
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.8e-62 244.2 215 63.3
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 8.8e-62 241.9 420 41.9
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.6e-61 240.4 425 40.7
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 2.6e-61 240.4 418 41.4
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 4.4e-61 239.6 430 40.2
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 5.7e-61 239.2 428 42.1
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 9.7e-61 238.4 418 40.9
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.7e-60 237.7 420 41.7
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.8e-60 236.1 428 40.7
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 4.8e-60 236.1 424 42.5
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.4e-59 234.6 415 39.3
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.8e-59 234.2 223 58.7
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.4e-59 233.8 433 38.3
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 5.3e-59 232.6 220 56.8
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 5.3e-59 232.6 427 42.9
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 7.0e-59 232.3 439 44.0
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 6.5e-57 225.7 424 39.9
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 8.5e-57 225.3 377 44.8
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.2e-56 223.4 451 38.6
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 4.2e-56 223.0 420 40.0
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.6e-55 221.1 248 51.2
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.1e-55 220.7 220 56.8
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 3.6e-55 219.9 415 39.5
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 4.7e-55 219.5 222 55.4
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.0e-54 218.4 435 37.5
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.4e-54 218.0 208 56.7
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.8e-54 217.6 421 42.0
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 2.3e-54 217.2 217 55.8
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 4.0e-54 216.5 417 41.5
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 4.0e-54 216.5 441 36.5
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 6.7e-54 215.7 446 37.9
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.5e-53 214.5 448 36.2
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 3.3e-53 213.4 202 56.4
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.2e-52 210.7 430 38.4
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.2e-52 210.7 416 40.6
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 6.3e-52 209.1 439 37.4
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 1.1e-51 208.4 435 42.5
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.8e-51 207.6 421 38.0
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.8e-51 207.6 209 55.0
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 4.1e-51 206.5 625 35.2
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.0e-50 204.1 426 41.3
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 3.5e-50 203.4 228 50.0
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 5.9e-50 202.6 225 51.1
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.7e-49 201.1 422 38.6
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.2e-47 194.9 212 51.4
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.6e-47 193.4 416 43.0
vmacro15912 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 6.1e-47 192.6 224 65.6
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.5e-45 188.0 227 46.7
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 2.6e-45 187.2 439 38.3
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.2e-44 184.1 452 33.8
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 1.1e-43 181.8 417 37.2
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.8e-43 181.0 426 36.6
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 7.7e-42 175.6 461 33.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.8e-41 173.3 429 34.7
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 9.5e-40 168.7 195 50.8
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 4.7e-39 166.4 347 36.3
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 8.0e-39 165.6 180 53.3
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 3.0e-38 163.7 212 47.2
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.5e-37 161.4 143 56.6
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 5.7e-37 159.5 214 45.3
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 1.7e-36 157.9 433 34.4
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.1e-35 155.2 503 34.6
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 7.8e-34 149.1 417 37.9
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 1.0e-33 148.7 420 39.5
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.3e-33 148.3 420 39.3
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 2.5e-32 144.1 420 39.0
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 5.6e-32 142.9 215 40.0
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 3.4e-29 133.7 217 42.4
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 9.8e-29 132.1 239 35.6
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 8.3e-28 129.0 196 39.8
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 9.2e-27 125.6 215 42.3
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 3.0e-25 120.6 428 32.0
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 8.6e-25 119.0 138 44.9
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.1e-24 118.6 239 35.1
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.2e-23 115.2 361 35.5
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 1.1e-22 112.1 338 38.5
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 6.8e-22 109.4 128 45.3
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.5e-21 108.2 182 37.4
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.5e-21 108.2 224 37.5
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.6e-21 107.5 119 47.9
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.4e-21 106.7 82 68.3
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 8.3e-20 102.4 80 66.2
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 5.4e-19 99.8 99 53.5
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 7.0e-19 99.4 80 60.0
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 7.3e-16 89.4 148 39.9
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.1e-15 85.9 123 44.7
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-10 72.0 184 31.0
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 3.5e-10 70.5 293 29.4
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.7e-09 68.2 168 32.7
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 3.0e-09 67.4 327 27.5
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 6.6e-09 66.2 167 31.7
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.5e-08 65.1 142 35.2
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 5.6e-08 63.2 279 26.2
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.2e-07 62.0 53 58.5
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 3.6e-07 60.5 54 57.4
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 8.1e-07 59.3 56 50.0
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.4e-06 57.8 96 36.5
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 3.1e-06 57.4 94 36.2
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 5.2e-06 56.6 94 36.2
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 5.2e-06 56.6 94 36.2
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 6.8e-06 56.2 52 48.1
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 6.8e-06 56.2 305 29.2


User provided reference genes

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