Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 4.8e-36 154.1 82 100.0
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 9.6e-29 129.8 82 87.8
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.2e-18 96.3 83 71.1
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 3.2e-16 88.2 72 72.2
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.6e-15 85.9 88 59.1
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.6e-15 84.3 83 65.1
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 7.9e-15 83.6 78 57.7
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 1.8e-14 82.4 72 65.3
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 5.1e-14 80.9 71 67.6
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 6.7e-14 80.5 81 65.4
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 8.7e-14 80.1 85 62.4
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.9e-13 79.0 70 70.0
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.9e-13 79.0 70 70.0
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.4e-13 77.0 82 59.8
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 9.6e-13 76.6 82 58.5
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 1.6e-12 75.9 73 61.6
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.6e-12 75.9 72 63.9
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 1.6e-12 75.9 86 55.8
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 3.7e-12 74.7 82 56.1
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 3.7e-12 74.7 81 61.7
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.8e-12 74.3 72 62.5
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.8e-12 74.3 82 57.3
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 6.2e-12 73.9 83 61.4
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 8.2e-12 73.6 70 60.0
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.1e-11 73.2 83 60.2
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.4e-11 72.8 82 54.9
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.4e-11 72.8 83 60.2
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.4e-11 72.8 77 61.0
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.4e-11 72.0 82 54.9
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.1e-11 71.6 82 54.9
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 4.0e-11 71.2 68 64.7
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 4.0e-11 71.2 68 64.7
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 5.3e-11 70.9 69 59.4
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 5.3e-11 70.9 81 51.9
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.3e-11 70.9 70 58.6
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 5.3e-11 70.9 79 54.4
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 5.3e-11 70.9 56 69.6
CSS0046147 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 9.0e-11 70.1 63 60.3
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 9.0e-11 70.1 58 72.4
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 9.0e-11 70.1 70 65.7
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.2e-10 69.7 72 59.7
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.2e-10 69.7 83 57.8
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 1.5e-10 69.3 69 59.4
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.5e-10 69.3 81 45.7
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 4.5e-10 67.8 78 52.6
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 5.8e-10 67.4 82 56.1
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.8e-10 67.4 72 59.7
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 5.8e-10 67.4 79 51.9
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 5.8e-10 67.4 80 55.0
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 7.6e-10 67.0 72 55.6
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.0e-09 66.6 85 54.1
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.0e-09 66.6 85 54.1
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.0e-09 66.6 81 53.1
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.0e-09 66.6 81 53.1
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.3e-09 66.2 57 70.2
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.3e-09 66.2 70 61.4
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.3e-09 66.2 83 54.2
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 2.2e-09 65.5 63 68.3
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 2.2e-09 65.5 83 51.8
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 2.2e-09 65.5 70 61.4
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 2.9e-09 65.1 82 56.1
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.9e-09 65.1 69 59.4
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.9e-09 65.1 73 58.9
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 2.9e-09 65.1 70 58.6
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.8e-09 64.7 70 52.9
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 3.8e-09 64.7 77 57.1
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 5.0e-09 64.3 72 52.8
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 5.0e-09 64.3 78 56.4
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 5.0e-09 64.3 71 56.3
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 5.0e-09 64.3 73 57.5
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 5.0e-09 64.3 82 51.2
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 5.0e-09 64.3 83 53.0
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 6.5e-09 63.9 71 60.6
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 6.5e-09 63.9 66 60.6
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 6.5e-09 63.9 83 49.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 6.5e-09 63.9 83 49.4
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 8.4e-09 63.5 84 52.4
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.1e-08 63.2 69 62.3
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.4e-08 62.8 66 48.5
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.4e-08 62.8 79 53.2
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.4e-08 62.8 82 51.2
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 1.9e-08 62.4 55 67.3
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 1.9e-08 62.4 71 59.2
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.9e-08 62.4 55 63.6
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 1.9e-08 62.4 83 50.6
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 1.9e-08 62.4 71 56.3
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.9e-08 62.4 70 55.7
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.5e-08 62.0 57 61.4
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.5e-08 62.0 57 61.4
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 2.5e-08 62.0 84 54.8
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 2.5e-08 62.0 82 47.6
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 2.5e-08 62.0 65 56.9
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 2.5e-08 62.0 51 64.7
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 2.5e-08 62.0 77 51.9
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 2.5e-08 62.0 72 55.6
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 3.2e-08 61.6 86 44.2
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.2e-08 61.6 95 38.9
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 3.2e-08 61.6 83 51.8
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.2e-08 61.2 80 47.5
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 4.2e-08 61.2 83 48.2
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 5.5e-08 60.8 61 54.1
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 7.1e-08 60.5 84 47.6
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 7.1e-08 60.5 80 46.2
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 7.1e-08 60.5 83 49.4
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 7.1e-08 60.5 57 57.9
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 9.3e-08 60.1 70 51.4
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 9.3e-08 60.1 64 48.4
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-07 59.7 63 58.7
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 1.2e-07 59.7 64 59.4
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 1.6e-07 59.3 56 60.7
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 1.6e-07 59.3 82 47.6
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 1.6e-07 59.3 85 51.8
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.6e-07 59.3 82 40.2
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 2.1e-07 58.9 70 51.4
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 2.1e-07 58.9 72 45.8
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 2.1e-07 58.9 70 51.4
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 2.1e-07 58.9 70 51.4
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.1e-07 58.9 57 61.4
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 2.1e-07 58.9 79 48.1
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.7e-07 58.5 70 50.0
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 2.7e-07 58.5 56 60.7
Eucgr.E01879 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.7e-07 58.5 63 57.1
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.7e-07 58.5 81 49.4
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 2.7e-07 58.5 82 46.3
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 2.7e-07 58.5 51 70.6
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 2.7e-07 58.5 51 70.6
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.7e-07 58.5 82 50.0
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 3.5e-07 58.2 70 52.9
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 3.5e-07 58.2 70 48.6
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 3.5e-07 58.2 54 59.3
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 3.5e-07 58.2 73 57.5
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 4.6e-07 57.8 55 60.0
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 4.6e-07 57.8 55 60.0
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 4.6e-07 57.8 70 48.6
CiPaw.09G078200 Carya illinoinensis HOM05D002385 ORTHO05D002245 4.6e-07 57.8 61 63.9
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.6e-07 57.8 72 44.4
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 4.6e-07 57.8 51 64.7
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.6e-07 57.8 70 51.4
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 6.1e-07 57.4 51 62.7
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 7.9e-07 57.0 70 50.0
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 7.9e-07 57.0 56 60.7
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 7.9e-07 57.0 70 50.0
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 7.9e-07 57.0 56 60.7
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 7.9e-07 57.0 82 48.8
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.0e-06 56.6 63 57.1
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 1.0e-06 56.6 82 50.0
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 1.0e-06 56.6 82 45.1
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.3e-06 56.2 64 57.8
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.3e-06 56.2 67 55.2
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.3e-06 56.2 51 56.9
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.3e-06 56.2 82 51.2
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 1.8e-06 55.8 62 54.8
Cc05_g00090 Coffea canephora HOM05D002385 ORTHO05D002245 1.8e-06 55.8 77 50.6
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 1.8e-06 55.8 63 58.7
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.3e-06 55.5 72 45.8
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 2.3e-06 55.5 65 43.1
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.3e-06 55.5 72 54.2
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.3e-06 55.5 80 43.8
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 2.3e-06 55.5 82 46.3
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 2.3e-06 55.5 58 58.6
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 2.3e-06 55.5 66 56.1
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 3.0e-06 55.1 56 48.2
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 3.0e-06 55.1 70 41.4
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.0e-06 55.1 73 54.8
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.0e-06 55.1 73 54.8
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.0e-06 55.1 73 54.8
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 3.0e-06 55.1 73 56.2
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 3.0e-06 55.1 77 46.8
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 3.9e-06 54.7 66 59.1
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 3.9e-06 54.7 73 54.8
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 3.9e-06 54.7 52 53.8
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 3.9e-06 54.7 64 54.7
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 5.1e-06 54.3 70 58.6
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 6.7e-06 53.9 82 45.1
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 6.7e-06 53.9 73 53.4
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.7e-06 53.9 54 61.1
AT2G32200 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 8.7e-06 53.5 68 50.0


User provided reference genes

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