Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.6e-86 322.0 163 100.0
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.0e-53 213.8 162 72.8
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 1.5e-33 146.7 84 89.3
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 2.4e-31 139.4 88 76.1
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 1.7e-29 133.3 84 78.6
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 7.2e-28 127.9 87 71.3
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 8.0e-27 124.4 83 74.7
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 1.0e-26 124.0 84 71.4
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.8e-26 123.2 83 68.7
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.3e-26 122.9 83 69.9
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 3.0e-26 122.5 82 69.5
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 6.8e-26 121.3 83 68.7
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 1.5e-25 120.2 81 70.4
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 1.3e-24 117.1 84 64.3
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 2.2e-24 116.3 83 69.9
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 2.2e-24 116.3 83 66.3
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 2.2e-24 116.3 83 65.1
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 2.2e-24 116.3 83 67.5
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 2.2e-24 116.3 83 66.3
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 4.9e-24 115.2 78 70.5
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 4.9e-24 115.2 83 65.1
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 8.3e-24 114.4 81 69.1
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 1.4e-23 113.6 78 71.8
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 2.4e-23 112.8 78 69.2
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.4e-23 112.8 83 69.9
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 3.2e-23 112.5 83 62.7
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 3.2e-23 112.5 83 63.9
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 3.2e-23 112.5 83 63.9
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 5.4e-23 111.7 83 66.3
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 7.0e-23 111.3 77 67.5
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 9.2e-23 110.9 83 67.5
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 1.6e-22 110.2 94 58.5
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 2.7e-22 109.4 90 60.0
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 2.7e-22 109.4 83 65.1
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 2.7e-22 109.4 83 65.1
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 4.5e-22 108.6 83 61.4
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 4.5e-22 108.6 81 66.7
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 4.5e-22 108.6 83 63.9
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 5.9e-22 108.2 83 63.9
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 5.9e-22 108.2 91 60.4
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 7.8e-22 107.8 91 60.4
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 1.0e-21 107.5 84 61.9
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.0e-21 107.5 81 66.7
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 1.7e-21 106.7 81 66.7
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.3e-21 106.3 81 65.4
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 2.3e-21 106.3 94 58.5
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 3.9e-21 105.5 83 61.4
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.6e-21 104.8 83 62.7
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 6.6e-21 104.8 82 64.6
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 8.6e-21 104.4 94 55.3
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 8.6e-21 104.4 83 63.9
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.1e-20 104.0 83 62.7
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 1.5e-20 103.6 83 62.7
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.5e-20 103.6 83 62.7
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.5e-20 103.6 81 64.2
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.5e-20 103.6 80 63.8
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 1.5e-20 103.6 87 60.9
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 1.9e-20 103.2 81 61.7
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.9e-20 103.2 83 62.7
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.9e-20 103.2 78 64.1
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 2.5e-20 102.8 73 64.4
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.5e-20 102.8 83 62.7
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.3e-20 102.4 80 62.5
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 5.6e-20 101.7 90 57.8
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 7.3e-20 101.3 81 64.2
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 7.3e-20 101.3 147 38.1
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 7.3e-20 101.3 83 63.9
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 1.2e-19 100.5 85 60.0
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 1.6e-19 100.1 149 40.9
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.6e-19 100.1 84 63.1
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 2.1e-19 99.8 84 56.0
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 2.1e-19 99.8 75 66.7
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 3.6e-19 99.0 159 37.7
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 6.1e-19 98.2 73 63.0
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 8.0e-19 97.8 82 62.2
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 1.0e-18 97.4 81 58.0
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 1.8e-18 96.7 84 60.7
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 3.1e-18 95.9 153 40.5
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 4.0e-18 95.5 103 54.4
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 5.2e-18 95.1 84 59.5
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 5.2e-18 95.1 84 60.7
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 5.2e-18 95.1 71 67.6
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 5.2e-18 95.1 84 59.5
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 6.8e-18 94.7 69 62.3
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 6.8e-18 94.7 78 61.5
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.2e-17 94.0 64 65.6
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 1.5e-17 93.6 74 58.1
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 5.8e-17 91.7 84 53.6
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 5.8e-17 91.7 84 53.6
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 5.8e-17 91.7 74 56.8
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 7.5e-17 91.3 73 58.9
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 7.5e-17 91.3 76 56.6
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 9.8e-17 90.9 113 43.4
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 9.8e-17 90.9 84 58.3
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 9.8e-17 90.9 67 62.7
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 2.9e-16 89.4 77 53.2
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 4.9e-16 88.6 83 56.6
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 8.3e-16 87.8 83 57.8
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.4e-15 87.0 81 55.6
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.9e-15 86.7 84 56.0
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 1.9e-15 86.7 83 56.6
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 1.9e-15 86.7 83 56.6
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 1.9e-15 86.7 84 56.0
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 2.4e-15 86.3 83 56.6
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 2.4e-15 86.3 84 56.0
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 7.0e-15 84.7 81 55.6
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 9.2e-15 84.3 84 54.8
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 1.6e-14 83.6 83 55.4
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 2.0e-14 83.2 70 58.6
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 2.0e-14 83.2 84 56.0
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 2.7e-14 82.8 83 56.6
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.0e-13 80.9 57 68.4
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 7.3e-12 74.7 74 55.4
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 8.0e-11 71.2 105 41.0
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 1.8e-10 70.1 81 51.9
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 5.8e-09 65.1 128 36.7
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 1.3e-08 63.9 74 45.9
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 3.2e-07 59.3 42 78.6


User provided reference genes

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