Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 0.0e+00 2152.5 1089 100.0
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 0.0e+00 1401.7 1149 66.0
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 5.7e-246 855.1 1028 51.9
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 2.4e-244 849.7 1219 46.2
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.5e-225 787.3 1261 42.7
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 2.5e-225 786.6 1270 41.8
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 3.5e-187 659.8 1246 39.6
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 7.7e-134 482.6 1034 35.9
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 4.0e-130 470.3 1200 32.5
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 3.3e-124 450.7 1323 30.8
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 1.2e-123 448.7 1212 33.1
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 2.1e-123 448.0 931 36.3
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 1.2e-121 442.2 1000 36.1
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 5.8e-121 439.9 1291 30.3
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 5.4e-119 433.3 1304 31.7
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 9.5e-116 422.5 998 33.8
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 9.5e-108 396.0 1277 29.7
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.9e-103 381.7 1314 30.2
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 4.1e-103 380.6 1277 29.6
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 2.7e-102 377.9 1256 30.1
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 8.6e-101 372.9 1249 30.1
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 2.8e-99 367.9 1246 30.2
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 8.1e-99 366.3 1043 31.6
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 1.1e-98 365.9 1301 29.1
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 2.6e-97 361.3 1281 29.0
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 1.9e-95 355.1 1286 28.8
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 3.2e-95 354.4 834 33.8
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 4.2e-95 354.0 1306 29.0
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 1.0e-93 349.4 1231 28.4
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.6e-91 340.9 1336 28.0
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 4.4e-89 334.0 1299 29.3
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.1e-82 312.8 1172 28.2
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 1.4e-82 312.4 977 30.3
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 3.4e-81 307.8 1314 27.3
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 6.4e-80 303.5 1022 29.8
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 2.1e-75 288.5 1232 27.2
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 8.4e-72 276.6 322 51.6
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 1.8e-69 268.9 1206 26.9
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.2e-65 256.1 1180 26.4
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 4.2e-63 247.7 1149 27.2
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 5.5e-63 247.3 1239 27.6
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 2.7e-62 245.0 1024 26.7
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 3.5e-62 244.6 1189 26.9
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 2.5e-60 238.4 853 29.1
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 4.3e-60 237.7 1162 26.8
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 2.2e-59 235.3 1187 27.5
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 2.8e-59 235.0 1292 25.8
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 1.4e-58 232.6 1121 26.7
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 4.1e-58 231.1 1331 24.9
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 7.9e-54 216.9 1200 26.1
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 1.5e-52 212.6 1249 25.3
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 9.1e-50 203.4 690 29.9
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 4.5e-49 201.1 1165 26.7
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 4.2e-47 194.5 1185 25.6
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 1.6e-46 192.6 1241 24.8
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 5.3e-42 177.6 1077 26.2
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 1.6e-41 176.0 945 24.2
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 2.6e-41 175.3 975 23.5
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 3.8e-40 171.4 991 26.2
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 3.8e-40 171.4 1182 23.5
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 1.2e-38 166.4 975 25.7
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 3.6e-38 164.9 1150 24.3
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 6.1e-38 164.1 951 26.5
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 3.0e-37 161.8 950 25.6
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 6.7e-37 160.6 988 27.0
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 3.3e-36 158.3 1251 23.3
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 1.8e-34 152.5 951 26.1
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 1.6e-33 149.4 953 24.9
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 3.5e-33 148.3 1255 23.3
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 5.9e-33 147.5 1031 26.1
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 7.7e-33 147.1 1239 22.7
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 8.5e-32 143.7 940 25.5
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 4.2e-31 141.4 956 26.7
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 8.8e-29 133.7 895 24.5
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 1.3e-27 129.8 994 24.7
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 6.3e-27 127.5 778 24.6
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 6.3e-27 127.5 941 24.4
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 2.9e-24 118.6 961 24.5
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 1.5e-23 116.3 954 24.9
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.9e-23 115.9 146 48.6
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 2.5e-23 115.5 127 54.3
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 6.1e-22 110.9 861 26.4
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 8.0e-22 110.5 624 25.8
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.4e-21 109.8 900 22.7
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 2.2e-19 102.4 749 24.4
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 1.4e-18 99.8 487 27.5
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 9.2e-18 97.1 1157 23.2
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 5.9e-17 94.4 1031 22.7
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 3.8e-16 91.7 994 22.8
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 1.1e-15 90.1 167 38.9
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 4.3e-15 88.2 250 32.8
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 9.5e-15 87.0 121 43.0
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.2e-12 80.1 173 36.4
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 3.4e-12 78.6 681 24.4
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 9.8e-12 77.0 267 30.3
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 1.7e-11 76.3 130 40.0
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 2.2e-11 75.9 310 28.1
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 1.1e-10 73.6 185 36.8
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 5.4e-10 71.2 65 53.8
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 3.5e-09 68.6 64 51.6
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 5.9e-09 67.8 137 38.7
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 1.0e-08 67.0 115 38.3
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 1.7e-08 66.2 121 36.4
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 3.0e-08 65.5 58 55.2
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 8.6e-08 63.9 655 23.4
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 1.1e-07 63.5 90 40.0
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 1.9e-07 62.8 55 56.4
C08p34100 Brassica napus HOM05D014107 ORTHO05D003056 1.9e-07 62.8 55 56.4
A09p51320 Brassica napus HOM05D014107 ORTHO05D003056 9.5e-07 60.5 82 42.7
BraA09t40573Z Brassica rapa HOM05D014107 ORTHO05D003056 4.7e-06 58.2 81 42.0
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 4.7e-06 58.2 64 48.4
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 4.7e-06 58.2 55 47.3


User provided reference genes

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